Browse Element(s) Details


Os.6005.1.S1_at

Description gb:AK071098.1
DB_XREF= gi:32981121
TID=Os.6005.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6005 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081C09, full insert sequence.
FL= gb:AK071098.1 gb:AK061258.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3880011/11Zinc finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38770OsAffx.19239.1.S1_at11/1111+22556906..22557789NA
LOC_Os11g38780OsAffx.31373.1.S1_at11/1111+22559202..22559777EF hand family protein
LOC_Os11g38790NANA11+22562352..22562676hypothetical protein
LOC_Os11g38800Os.6005.1.S1_at11/1111+22564635..22571192Zinc finger protein, putative, expressed
LOC_Os11g38800OsAffx.31374.1.S1_at8/1111+22564635..22571192Zinc finger protein, putative, expressed
LOC_Os11g38810Os.15682.1.A1_at11/1111+22576196..22580359mannose-6-phosphate isomerase, class I family protein, expressed
LOC_Os11g38820Os.46862.1.S1_at8/1111+22589479..22595092retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g38820OsAffx.20329.1.S1_at2/1111+22589479..22595092retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g38830NANA11+22595980..22596465hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6005.1.S1_at--322--9651Chr11:22569369..22569393 (25 bp)
TCAGTATTTTGCATCGCCGGCGACA
LOC_Os11g38800
Os.6005.1.S1_at--848--1331Chr11:22570689..22570713 (25 bp)
AGAGGTGGCATTCATCCTGCAATCA
LOC_Os11g38800
Os.6005.1.S1_at--910--1211Chr11:22570818..22570842 (25 bp)
AGTTACTTCAGTAGCGTCTCTCAAC
LOC_Os11g38800
Os.6005.1.S1_at--654--9711Chr11:22570838..22570862 (25 bp)
TCAACTACTGACTCGCACATGCAGA
LOC_Os11g38800
Os.6005.1.S1_at--598--1331Chr11:22570866..22570890 (25 bp)
AGAGGATACCTCAGCTAGTGGCCGC
LOC_Os11g38800
Os.6005.1.S1_at--717--4511Chr11:22570886..22570910 (25 bp)
GCCGCTTTGTTGTTTCCTGTTGCAA
LOC_Os11g38800
Os.6005.1.S1_at--999--1051Chr11:22570918..22570942 (25 bp)
AGGGACGCTAAGAACCTGGCCTCGC
LOC_Os11g38800
Os.6005.1.S1_at--555--2611Chr11:22570971..22570995 (25 bp)
AACGCCAGAGATTCATTTGTTGCAA
LOC_Os11g38800
Os.6005.1.S1_at--993--10251Chr11:22570986..22571010 (25 bp)
TTTGTTGCAAGCGACCGCAGCTTAA
LOC_Os11g38800
Os.6005.1.S1_at--1087--9951Chr11:22571018..22571042 (25 bp)
TACCCTTCGATTTGTCTCTGTGTAA
LOC_Os11g38800
Os.6005.1.S1_at--396--4391Chr11:22571103..22571127 (25 bp)
GCCAAGTGTTTTACTGCCATGTACA
LOC_Os11g38800
Target Sequence 
TCAGTATTTTGCATCGCCGGCGACAAAGACAGGAAGCGGCTGCAATTGCTGCAGCAGAGGTGGCATTCATCCTGCAATCA
GCCCAAGGCCATGCCCTTCAGTTCACCATCGCTCCAGACTCCCCCGCCACTCCACAGCATGAGCCACAGCAGCAGCAGCC
GCAGCCGCAGCCGCAGCAATAGCTAGTTACTTCAGTAGCGTCTCTCAACTACTGACTCGCACATGCAGAAGAAGAGGATA
CCTCAGCTAGTGGCCGCTTTGTTGTTTCCTGTTGCAACTGGCCCAGGGACGCTAAGAACCTGGCCTCGCCTTGTGTGGCC
GGGTAGAAACCTTGTAAAACGCCAGAGATTCATTTGTTGCAAGCGACCGCAGCTTAAGCCCCGCTACCCTTCGATTTGTC
TCTGTGTAACTCAAGCATTGATTTATTGTAAATTTGTCGTCTGTTGGAGTCCATTTTTTTAGTTCCTTTGCCAAGTGTTT
TACTGCCATGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6005.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis