Browse Element(s) Details


OsAffx.31374.1.S1_at

Description tigr:9639.m03526
TID=OsAffx.31374.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g388008/11Zinc finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38770OsAffx.19239.1.S1_at11/1111+22556906..22557789NA
LOC_Os11g38780OsAffx.31373.1.S1_at11/1111+22559202..22559777EF hand family protein
LOC_Os11g38790NANA11+22562352..22562676hypothetical protein
LOC_Os11g38800Os.6005.1.S1_at11/1111+22564635..22571192Zinc finger protein, putative, expressed
LOC_Os11g38800OsAffx.31374.1.S1_at8/1111+22564635..22571192Zinc finger protein, putative, expressed
LOC_Os11g38810Os.15682.1.A1_at11/1111+22576196..22580359mannose-6-phosphate isomerase, class I family protein, expressed
LOC_Os11g38820Os.46862.1.S1_at8/1111+22589479..22595092retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g38820OsAffx.20329.1.S1_at2/1111+22589479..22595092retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g38830NANA11+22595980..22596465hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31374.1.S1_at--935--1091NONE
AGTGGCAGCCTCAAGGATAGTATCA
NONE
OsAffx.31374.1.S1_at--783--8251NONE
GGCAGCCTCAAGGATAGTATCACTG
NONE
OsAffx.31374.1.S1_at--596--4451NONE
GCCTCAAGGATAGTATCACTGCCAT
NONE
OsAffx.31374.1.S1_at--153--2911Chr11:22566154..22566177 (24 bp)
AAGGATAGTATCACTGCCATATCAT
LOC_Os11g38800
OsAffx.31374.1.S1_at--257--6491Chr11:22566156..22566180 (25 bp)
GATAGTATCACTGCCATATCATATG
LOC_Os11g38800
OsAffx.31374.1.S1_at--482--10171Chr11:22566161..22566185 (25 bp)
TATCACTGCCATATCATATGATGGG
LOC_Os11g38800
OsAffx.31374.1.S1_at--498--10791Chr11:22566193..22566217 (25 bp)
TTGTTCACCCCTATGGCAGCATAGT
LOC_Os11g38800
OsAffx.31374.1.S1_at--790--6751Chr11:22566195..22566219 (25 bp)
GTTCACCCCTATGGCAGCATAGTTT
LOC_Os11g38800
OsAffx.31374.1.S1_at--227--1811Chr11:22566199..22566223 (25 bp)
ACCCCTATGGCAGCATAGTTTACTG
LOC_Os11g38800
OsAffx.31374.1.S1_at--212--3711Chr11:22566203..22566227 (25 bp)
CTATGGCAGCATAGTTTACTGGGAT
LOC_Os11g38800
OsAffx.31374.1.S1_at--71--3411Chr11:22566209..22566233 (25 bp)
CAGCATAGTTTACTGGGATGCTATC
LOC_Os11g38800
Target Sequence 
AGTGGCAGCCTCAAGGATAGTATCACTGCCATATCATATGATGGGGATAAAATTGTTCACCCCTATGGCAGCATAGTTTA
CTGGGATGCTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis