Browse Element(s) Details


OsAffx.19239.1.S1_at

Description tigr:9639.m03523
TID=OsAffx.19239.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3877011/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38770OsAffx.19239.1.S1_at11/1111+22556906..22557789NA
LOC_Os11g38780OsAffx.31373.1.S1_at11/1111+22559202..22559777EF hand family protein
LOC_Os11g38790NANA11+22562352..22562676hypothetical protein
LOC_Os11g38800Os.6005.1.S1_at11/1111+22564635..22571192Zinc finger protein, putative, expressed
LOC_Os11g38800OsAffx.31374.1.S1_at8/1111+22564635..22571192Zinc finger protein, putative, expressed
LOC_Os11g38810Os.15682.1.A1_at11/1111+22576196..22580359mannose-6-phosphate isomerase, class I family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19239.1.S1_at--729--9391Chr11:22556975..22556999 (25 bp)
TCGTTTGTCCCACGCCGTCGTTGGG
LOC_Os11g38770
OsAffx.19239.1.S1_at--930--10331Chr11:22556979..22557003 (25 bp)
TTGTCCCACGCCGTCGTTGGGACAT
LOC_Os11g38770
OsAffx.19239.1.S1_at--1060--4491Chr11:22556988..22557012 (25 bp)
GCCGTCGTTGGGACATGGACTACTG
LOC_Os11g38770
OsAffx.19239.1.S1_at--870--4211Chr11:22556989..22557013 (25 bp)
CCGTCGTTGGGACATGGACTACTGT
LOC_Os11g38770
OsAffx.19239.1.S1_at--865--3991Chr11:22556990..22557014 (25 bp)
CGTCGTTGGGACATGGACTACTGTA
LOC_Os11g38770
OsAffx.19239.1.S1_at--255--8651Chr11:22556996..22557020 (25 bp)
TGGGACATGGACTACTGTAAGGCTC
LOC_Os11g38770
OsAffx.19239.1.S1_at--170--7591Chr11:22556997..22557021 (25 bp)
GGGACATGGACTACTGTAAGGCTCG
LOC_Os11g38770
OsAffx.19239.1.S1_at--173--8131Chr11:22556998..22557022 (25 bp)
GGACATGGACTACTGTAAGGCTCGT
LOC_Os11g38770
OsAffx.19239.1.S1_at--1051--5631Chr11:22556999..22557023 (25 bp)
GACATGGACTACTGTAAGGCTCGTT
LOC_Os11g38770
OsAffx.19239.1.S1_at--427--2091Chr11:22557000..22557024 (25 bp)
ACATGGACTACTGTAAGGCTCGTTG
LOC_Os11g38770
OsAffx.19239.1.S1_at--35--3491Chr11:22557001..22557025 (25 bp)
CATGGACTACTGTAAGGCTCGTTGG
LOC_Os11g38770
Target Sequence 
TCGTTTGTCCCACGCCGTCGTTGGGACATGGACTACTGTAAGGCTCGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis