Browse Element(s) Details


OsAffx.19252.1.S1_at

Description tigr:9639.m03597
TID=OsAffx.19252.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Jacalin-like lectin domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3942011/11Jacalin-like lectin domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39370Os.9292.1.S1_at11/1111+22929909..22935436BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os11g39380NANA11+22942159..22942671hypothetical protein
LOC_Os11g39390OsAffx.19251.1.S1_at11/1111+22943123..22943461hypothetical protein
LOC_Os11g39400OsAffx.31384.1.S1_at11/1111+22952630..22954042hypothetical protein
LOC_Os11g39410OsAffx.31385.1.S1_at11/1111+22954846..22957148hypothetical protein
LOC_Os11g39410Os.54998.1.S1_at1/1111+22954846..22957148hypothetical protein
LOC_Os11g39420OsAffx.19252.1.S1_at11/1111+22958615..22964763Jacalin-like lectin domain containing protein
LOC_Os11g39430Os.52669.1.S1_at9/1111+22966215..22970632expressed protein
LOC_Os11g39440NANA11+22985297..22986700retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19252.1.S1_at--746--2911Chr11:22960042..22960066 (25 bp)
AAGGATCTCCTTTCCAGGTTCCAAT
LOC_Os11g39420
OsAffx.19252.1.S1_at--499--3051Chr11:22959960..22959984 (25 bp)
AATCGGCGTCTATATCAACCCTGAA
LOC_Os11g39420
OsAffx.19252.1.S1_at--602--631Chr11:22959087..22959111 (25 bp)
ATGCTCAGGACATCGACATCACTAT
LOC_Os11g39420
OsAffx.19252.1.S1_at--1033--10091Chr11:22959065..22959089 (25 bp)
TATGCAACCCCAACGTCTGGAGAGT
LOC_Os11g39420
OsAffx.19252.1.S1_at--927--3131Chr11:22959035..22959059 (25 bp)
AATTAGTTGTGGTGCTGTCGTCGAC
LOC_Os11g39420
OsAffx.19252.1.S1_at--1121--7211Chr11:22959016..22959040 (25 bp)
GTCGACTCACTTGCATTCACATATG
LOC_Os11g39420
OsAffx.19252.1.S1_at--307--5291Chr11:22958984..22959008 (25 bp)
GAATGGGCACAAGCACGCTGCAGGT
LOC_Os11g39420
OsAffx.19252.1.S1_at--759--8451Chr11:22958825..22958849 (25 bp)
TGGCCCTTCCGAATTCGTGACGAAA
LOC_Os11g39420
OsAffx.19252.1.S1_at--224--8791Chr11:22958762..22958786 (25 bp)
TGTTATCACGTCAATCCACTTTACC
LOC_Os11g39420
OsAffx.19252.1.S1_at--973--9211Chr11:22958748..22958772 (25 bp)
TCCACTTTACCACCAATGCTGATAG
LOC_Os11g39420
OsAffx.19252.1.S1_at--703--10291Chr11:22958690..22958714 (25 bp)
TTTCGAGGCTCCAATGCACAGCGAT
LOC_Os11g39420
Target Sequence 
AAGGATCTCCTTTCCAGGTTCCAATGCGTAACAATGCCAGCATTATTGGCTTCTTCGGTCGAGGAGATCTGTATGTCAAT
GCAATCGGCGTCTATATCAACCCTGAACAAGAAAAGATCGAACAAGAGGCTGGGATCACCAAGATTGGGCCGTGGGGTGG
AAATGGAGGGAATGCTCAGGACATCGACATCACTATGCAACCCCAACGTCTGGAGAGTATAACAATTAGTTGTGGTGCTG
TCGTCGACTCACTTGCATTCACATATGCTGACAAGAATGGGCACAAGCACGCTGCAGGTCCGTGGGGCGGGAATGGAGGC
AGAATTCATAAGATTGAGCTTGGCCCTTCCGAATTCGTGACGAAAGTATATGGTACAATTGGTCCATTTGGTAAATTCTC
CAGTGTTATCACGTCAATCCACTTTACCACCAATGCTGATAGATATGGACCTTTTGGACAAGGAACCGGAACTCGTTTCG
AGGCTCCAATGCACAGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis