Browse Element(s) Details


OsAffx.19255.1.S1_at

Description tigr:9639.m03607
TID=OsAffx.19255.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3952010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39490OsAffx.7354.1.S1_at11/1111+23007041..23011803Jacalin-like lectin domain containing protein
LOC_Os11g39500OsAffx.31388.1.S1_at11/1111+23012951..23013340hypothetical protein
LOC_Os11g39510NANA11+23021147..23029240retrotransposon protein, putative, unclassified
LOC_Os11g39520OsAffx.19255.1.S1_at10/1111+23033794..23034773hypothetical protein
LOC_Os11g39530OsAffx.7355.1.S1_at10/1111+23035948..23044173Jacalin-like lectin domain containing protein, expressed
LOC_Os11g39540Os.53400.1.S1_at3/1111+23052236..2305714014-3-3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19255.1.S1_at--1076--651Chr11:23033837..23033861 (25 bp)
ATGCAAGTCGTTTAGCTCTCTGTTA
LOC_Os11g39520
OsAffx.19255.1.S1_at--1072--9991Chr11:23033849..23033873 (25 bp)
TAGCTCTCTGTTACAACGACTTAGT
LOC_Os11g39520
OsAffx.19255.1.S1_at--946--1811Chr11:23033864..23033888 (25 bp)
ACGACTTAGTACATTTCCGTAACAG
LOC_Os11g39520
OsAffx.19255.1.S1_at--713--9551Chr11:23033877..23033901 (25 bp)
TTTCCGTAACAGAGGGAGCATGTCA
LOC_Os11g39520
OsAffx.19255.1.S1_at--244--4991Chr11:23033894..23033918 (25 bp)
GCATGTCAAATGTGTCGTTCAGTAA
LOC_Os11g39520
OsAffx.19255.1.S1_at--660--1331NONE
AGAGATGCAAGGACAGTAGTACTAC
NONE
OsAffx.19255.1.S1_at--999--10051Chr11:23034644..23034668 (25 bp)
TAGTACTACTCGCTATCACGTGGAC
LOC_Os11g39520
OsAffx.19255.1.S1_at--819--4151Chr11:23034668..23034692 (25 bp)
CCCCACAGACCCTCGGAAAAATGTG
LOC_Os11g39520
OsAffx.19255.1.S1_at--534--5531Chr11:23034683..23034707 (25 bp)
GAAAAATGTGAACCTTGCAGCGGCT
LOC_Os11g39520
OsAffx.19255.1.S1_at--67--10751Chr11:23034697..23034721 (25 bp)
TTGCAGCGGCTGCAATTGTGCAGCT
LOC_Os11g39520
OsAffx.19255.1.S1_at--71--8691Chr11:23034713..23034737 (25 bp)
TGTGCAGCTGCATGCCCATAAAGAT
LOC_Os11g39520
Target Sequence 
ATGCAAGTCGTTTAGCTCTCTGTTACAACGACTTAGTACATTTCCGTAACAGAGGGAGCATGTCAAATGTGTCGTTCAGT
AAGAGATGCAAGGACAGTAGTACTACTCGCTATCACGTGGACCCCACAGACCCTCGGAAAAATGTGAACCTTGCAGCGGC
TGCAATTGTGCAGCTGCATGCCCATAAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19255.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis