Browse Element(s) Details


Os.53400.1.S1_at

Description gb:AK072443.1
DB_XREF= gi:32982466
TID=Os.53400.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53400 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023109G22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023109G22, full insert sequence.
FL= gb:AK072443.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g395403/1114-3-3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39510NANA11+23021147..23029240retrotransposon protein, putative, unclassified
LOC_Os11g39520OsAffx.19255.1.S1_at10/1111+23033794..23034773hypothetical protein
LOC_Os11g39530OsAffx.7355.1.S1_at10/1111+23035948..23044173Jacalin-like lectin domain containing protein, expressed
LOC_Os11g39540Os.53400.1.S1_at3/1111+23052236..2305714014-3-3, putative, expressed
LOC_Os11g39550OsAffx.19256.1.S1_at11/1111+23063912..23074165NB-ARC domain containing protein
LOC_Os11g39550OsAffx.31389.1.S1_at11/1111+23063912..23074165NB-ARC domain containing protein
LOC_Os11g39559OsAffx.31390.1.S1_at11/1111+23075816..23077153F-box domain containing protein
LOC_Os11g39568NANA11+23077514..23079658S1 self-incompatibility locus-linked pollen G211 protein, putative
LOC_Os11g39580OsAffx.19257.1.S1_at11/1111+23080690..23083192hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0005886cellular_componentplasma membrane
GO:0009570cellular_componentchloroplast stroma
GO:0005515molecular_functionprotein binding
GO:0016597molecular_functionamino acid binding
GO:0045309molecular_functionprotein phosphorylated amino acid binding
GO:0051117molecular_functionATPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53400.1.S1_at--745--8311Chr11:23053447..23053471 (25 bp)
GGCTACTGCTGAGATTAACTCTGCT
LOC_Os11g39540
Os.53400.1.S1_at--536--2531Chr11:23053431..23053455 (25 bp)
AACTCTGCTGGTGTGGAGGGTTACA
LOC_Os11g39540
Os.53400.1.S1_at--532--3531Chr11:23053399..23053423 (25 bp)
CATGCTTATGATGCAGCTCCTGAAG
LOC_Os11g39540
Os.53400.1.S1_at--105--5591Chr11:23052205..23052229 (25 bp)
GAAATGTTCTAAAGGCCCCAGCATG
NONE
Os.53400.1.S1_at--748--3091Chr11:23052152..23052176 (25 bp)
AATACTGCTACTGAACTTGCGACAT
NONE
Os.53400.1.S1_at--1036--10691Chr11:23052136..23052160 (25 bp)
TTGCGACATTTATCATGGGAGCCGT
NONE
Os.53400.1.S1_at--814--8631Chr11:23052121..23052145 (25 bp)
TGGGAGCCGTGGAAATCACCTTTAT
NONE
Os.53400.1.S1_at--63--7691NONE
GGGTCTTGGTGTGACTCCCAAAGTA
NONE
Os.53400.1.S1_at--901--6511Chr11:23052015..23052039 (25 bp)
GATTTGATAACCATGCACCAGCTTT
NONE
Os.53400.1.S1_at--989--7811Chr11:23051966..23051990 (25 bp)
GGTCACCAACCCAGCTTTAATATTA
NONE
Os.53400.1.S1_at--982--2691Chr11:23051908..23051932 (25 bp)
AAGCATCTTTGTATACCAACGGGAT
NONE
Target Sequence 
GGCTACTGCTGAGATTAACTCTGCTGGTGTGGAGGGTTACAAGGACAGCATGCTTATGATGCAGCTCCTGAAGGAGAACC
TGGCATTGTGGACATCAGAACTAACTGGAGGTGAAACATCTAAGGACGATGATGTTGTTATGGAGGGCTAACTGTCTGAA
ATGTTCTAAAGGCCCCAGCATGTGAGCAAAACAATCAGTAACATTGTAACAATACTGCTACTGAACTTGCGACATTTATC
ATGGGAGCCGTGGAAATCACCTTTATTTTTCCCTTTCTTCTGTAGTTTCTTTTTTTTGGCCCTCGCTTGGGTCTTGGTGT
GACTCCCAAAGTATTTTCAGAGTTTGGATTTGATAACCATGCACCAGCTTTGGTTATATTTTGAGATCTTGGAGTGGTCA
CCAACCCAGCTTTAATATTAGTTTGAGAGTACTTTTTTTTTCCAATGCTTGTTAAGCATCTTTGTATACCAACGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis