Browse Element(s) Details


OsAffx.31390.1.S1_at

Description tigr:9639.m03614
TID=OsAffx.31390.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3955911/11F-box domain containing protein
LOC_Os11g3960911/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39540Os.53400.1.S1_at3/1111+23052236..2305714014-3-3, putative, expressed
LOC_Os11g39550OsAffx.19256.1.S1_at11/1111+23063912..23074165NB-ARC domain containing protein
LOC_Os11g39550OsAffx.31389.1.S1_at11/1111+23063912..23074165NB-ARC domain containing protein
LOC_Os11g39559OsAffx.31390.1.S1_at11/1111+23075816..23077153F-box domain containing protein
LOC_Os11g39568NANA11+23077514..23079658S1 self-incompatibility locus-linked pollen G211 protein, putative
LOC_Os11g39580OsAffx.19257.1.S1_at11/1111+23080690..23083192hypothetical protein
LOC_Os11g39590OsAffx.19256.2.S1_at2/1111+23084301..23089072NB-ARC domain containing protein
LOC_Os11g39600OsAffx.31389.1.S1_at11/1111+23091535..23093947resistance protein, putative
LOC_Os11g39609OsAffx.31390.1.S1_at11/1111+23095598..23096935F-box domain containing protein
LOC_Os11g39618OsAffx.30510.1.S1_at1/1111+23097296..23099440S1 self-incompatibility locus-linked pollen G211 protein, putative
LOC_Os11g39630OsAffx.19257.1.S1_at11/1111+23100472..23102972hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31390.1.S1_at--1139--7972Chr11:23096167..23096191 (25 bp)
GGATCCATCTACACCTTAGATCTCA
LOC_Os11g39609
OsAffx.31390.1.S1_at--348--8052Chr11:23096140..23096164 (25 bp)
GGAGATTCTCCTATCGTGAGACAGA
LOC_Os11g39609
OsAffx.31390.1.S1_at--386--6452Chr11:23096117..23096141 (25 bp)
GATCACAGGCAAAGTTCCACAACGG
LOC_Os11g39609
OsAffx.31390.1.S1_at--501--5832Chr11:23096014..23096038 (25 bp)
GACCTGATGGCAACATCTTCATCGG
LOC_Os11g39609
OsAffx.31390.1.S1_at--526--6292Chr11:23095957..23095981 (25 bp)
GATGATGACCTAGATCCTATCGTTG
LOC_Os11g39609
OsAffx.31390.1.S1_at--349--5672Chr11:23095921..23095945 (25 bp)
GACATGTATCCATATCTAGAGCTCA
LOC_Os11g39609
OsAffx.31390.1.S1_at--187--7992Chr11:23095829..23095853 (25 bp)
GGATGATCATGCATTATTCCTTGGA
LOC_Os11g39609
OsAffx.31390.1.S1_at--333--3172Chr11:23095753..23095777 (25 bp)
AATTGTGCCTACATTACCGATGACT
LOC_Os11g39609
OsAffx.31390.1.S1_at--776--5712Chr11:23095732..23095756 (25 bp)
GACTCATCTGAGTATGTCTACATGT
LOC_Os11g39609
OsAffx.31390.1.S1_at--306--2152Chr11:23095655..23095679 (25 bp)
ACAGAGCTTTGCGTGTACCGAGAAT
LOC_Os11g39609
OsAffx.31390.1.S1_at--282--6992Chr11:23095641..23095665 (25 bp)
GTACCGAGAATTCGCCTCCATGGTT
LOC_Os11g39609
Target Sequence 
GGATCCATCTACACCTTAGATCTCAATGGAGATTCTCCTATCGTGAGACAGATCACAGGCAAAGTTCCACAACGGTGGTA
CCCTTCGGCCATGTACCTCCTACGGGCGCCATGGGGTGACATCCTTCAAGTACGGAGATGGAGGAGCTATGTTGACCTGA
TGGCAACATCTTCATCGGAGCATCCAAATAATCTTGAGGTGGACGATGACGATGATGACCTAGATCCTATCGTTGGTATC
AATGATGACATGTATCCATATCTAGAGCTCAAGACAACTGACATTGAAGTGTTCAGAGTCGATTTTGATCGGAAAAAACT
TGTGAAGATGAAGAGCTTGGATGATCATGCATTATTCCTTGGATACAATAGCACAATGTGCATTTCAACCAAGGATTATC
CTATGTTAAAGCCAAATTGTGCCTACATTACCGATGACTCATCTGAGTATGTCTACATGTATAAGAATAGTTGGCGAGAG
ATAGGTATTTGGGACATGACAAGTAAGAGCTTACAGAGCTTTGCGTGTACCGAGAATTCGCCTCCATGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis