Browse Element(s) Details


OsAffx.19256.2.S1_at

Description tigr:9639.m03611
TID=OsAffx.19256.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g395902/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39550OsAffx.19256.1.S1_at11/1111+23063912..23074165NB-ARC domain containing protein
LOC_Os11g39550OsAffx.31389.1.S1_at11/1111+23063912..23074165NB-ARC domain containing protein
LOC_Os11g39559OsAffx.31390.1.S1_at11/1111+23075816..23077153F-box domain containing protein
LOC_Os11g39568NANA11+23077514..23079658S1 self-incompatibility locus-linked pollen G211 protein, putative
LOC_Os11g39580OsAffx.19257.1.S1_at11/1111+23080690..23083192hypothetical protein
LOC_Os11g39590OsAffx.19256.2.S1_at2/1111+23084301..23089072NB-ARC domain containing protein
LOC_Os11g39600OsAffx.31389.1.S1_at11/1111+23091535..23093947resistance protein, putative
LOC_Os11g39609OsAffx.31390.1.S1_at11/1111+23095598..23096935F-box domain containing protein
LOC_Os11g39618OsAffx.30510.1.S1_at1/1111+23097296..23099440S1 self-incompatibility locus-linked pollen G211 protein, putative
LOC_Os11g39630OsAffx.19257.1.S1_at11/1111+23100472..23102972hypothetical protein
LOC_Os11g39640Os.27217.1.A1_at11/1111+23109534..23111540Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g39640OsAffx.13463.1.S1_at1/1111+23109534..23111540Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g39650Os.20727.1.S1_at11/1111+23113750..23117939St12p protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19256.2.S1_at--592--671Chr11:23084340..23084362 (23 bp)
ATGACGACCTCGAGTTCCAAATGCA
LOC_Os11g39590
OsAffx.19256.2.S1_at--624--1851Chr11:23084340..23084359 (20 bp)
ACGACCTCGAGTTCCAAATGCAACA
LOC_Os11g39590
OsAffx.19256.2.S1_at--986--6051NONE
GAGTTCCAAATGCAACAGCACCCTG
NONE
OsAffx.19256.2.S1_at--491--2292Chr11:23103200..23103220 (21 bp)
AAATGCAACAGCACCCTGTCGTCTG
NONE
OsAffx.19256.2.S1_at--937--551Chr11:23083376..23083400 (25 bp)
ATCCGGATCCGCAACCAGCAAGGCG
NONE
OsAffx.19256.2.S1_at--70--9312Chr11:23103089..23103113 (25 bp)
TCCGCCCTCTGTCGGAGAAGATGCG
NONE
OsAffx.19256.2.S1_at--145--4071Chr11:23083278..23083302 (25 bp)
CGAGACCCCCGAGGCTATCAGAGGA
NONE
OsAffx.19256.2.S1_at--417--10251Chr11:23083223..23083247 (25 bp)
TTTTGGAATAGCTTTCGAACACCGC
NONE
OsAffx.19256.2.S1_at--464--8211Chr11:23083219..23083243 (25 bp)
GGAATAGCTTTCGAACACCGCTCCT
NONE
OsAffx.19256.2.S1_at--57--9991Chr11:23083215..23083239 (25 bp)
TAGCTTTCGAACACCGCTCCTAGCA
NONE
OsAffx.19256.2.S1_at--502--9252Chr11:23102978..23103002 (25 bp)
TCCTAGCATCGCTCTCTTGCAAGCT
NONE
Target Sequence 
ATGACGACCTCGAGTTCCAAATGCAACAGCACCCTGTCGTCTGCACCATCCACGTCGCCACCATCCGGATCCGCAACCAG
CAAGGCGTGCTGCTGATGGAGACCGAGCAGCTCCTCGCTGACGGCACGCTCCGCCCTCTGTCGGAGAAGATGCGCCCCGG
CGAGACCCCCGAGGCTATCAGAGGAAGCCGAAGCTCGCCCGGCGGCGGAGGCAATTTTTGGAATAGCTTTCGAACACCGC
TCCTAGCATCGCTCTCTTGCAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19256.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis