Browse Element(s) Details


Os.20727.1.S1_at

Description gb:AK099760.1
DB_XREF= gi:32984969
TID=Os.20727.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.20727 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093M02, full insert sequence.
FL= gb:AK099760.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3965011/11St12p protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39590OsAffx.19256.2.S1_at2/1111+23084301..23089072NB-ARC domain containing protein
LOC_Os11g39600OsAffx.31389.1.S1_at11/1111+23091535..23093947resistance protein, putative
LOC_Os11g39609OsAffx.31390.1.S1_at11/1111+23095598..23096935F-box domain containing protein
LOC_Os11g39618OsAffx.30510.1.S1_at1/1111+23097296..23099440S1 self-incompatibility locus-linked pollen G211 protein, putative
LOC_Os11g39630OsAffx.19257.1.S1_at11/1111+23100472..23102972hypothetical protein
LOC_Os11g39640Os.27217.1.A1_at11/1111+23109534..23111540Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g39640OsAffx.13463.1.S1_at1/1111+23109534..23111540Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g39650Os.20727.1.S1_at11/1111+23113750..23117939St12p protein, putative, expressed
LOC_Os11g39660OsAffx.19258.2.S1_x_at11/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39660OsAffx.24518.2.S1_x_at2/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39660Os.57200.1.S1_x_at1/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39670Os.54818.1.S1_at10/1111+23126858..23131260seryl-tRNA synthetase family protein, expressed
LOC_Os11g39670Os.53877.1.S1_x_at10/1111+23126858..23131260seryl-tRNA synthetase family protein, expressed
LOC_Os11g39680OsAffx.31391.1.S1_at11/1111+23134150..23134689hypothetical protein
LOC_Os11g39690OsAffx.7359.1.S1_at11/1111+23138929..23139138hypothetical protein
LOC_Os11g39690OsAffx.7359.1.S1_x_at11/1111+23138929..23139138hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006888biological_processER to Golgi vesicle-mediated transport
GO:0030176cellular_componentintegral to endoplasmic reticulum membrane
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20727.1.S1_at--1029--8231Chr11:23114477..23114501 (25 bp)
GGCACATCTTGGCATTATTACTACA
LOC_Os11g39650
Os.20727.1.S1_at--411--10471Chr11:23114460..23114484 (25 bp)
TTACTACATTGGCATTCTCTCAAGA
LOC_Os11g39650
Os.20727.1.S1_at--601--131Chr11:23114344..23114460 (25 bp)
ATTCAAGGACCTTGCTGTCGACTTC
LOC_Os11g39650
Os.20727.1.S1_at--439--6571Chr11:23114315..23114339 (25 bp)
GATTCTACTGCTAGGGTGACTTCAA
LOC_Os11g39650
Os.20727.1.S1_at--129--7971Chr11:23114112..23114136 (25 bp)
GGATCTCTTAGCAAGGTTTCTACAT
LOC_Os11g39650
Os.20727.1.S1_at--106--10431Chr11:23114049..23114073 (25 bp)
TTATCATCTGATCGTCTACTGGAGA
LOC_Os11g39650
Os.20727.1.S1_at--255--6491Chr11:23114017..23114041 (25 bp)
GATACCGTCTGGGAGATCATTTTTG
LOC_Os11g39650
Os.20727.1.S1_at--814--9271Chr11:23113958..23113982 (25 bp)
TCCTGTCCGCTGAACATAGCAAGAT
LOC_Os11g39650
Os.20727.1.S1_at--1026--3631Chr11:23113927..23113951 (25 bp)
CTTCCCTTTGTCACGCTTGTACAAA
LOC_Os11g39650
Os.20727.1.S1_at--428--7391Chr11:23113859..23113883 (25 bp)
GTGAGTTATAATGCCCTCTAGCTGC
LOC_Os11g39650
Os.20727.1.S1_at--239--3771Chr11:23113844..23113868 (25 bp)
CTCTAGCTGCTCTCGTGAGGAAAAT
LOC_Os11g39650
Target Sequence 
GGCACATCTTGGCATTATTACTACATTGGCATTCTCTCAAGATTCAAGGACCTTGCTGTCGACTTCCTTCGATTCTACTG
CTAGGGTGACTTCAATTGGATCACCTAAGAGTCGTGGTATAAGTATATGGACCATGATACTGGTTATTATTCTTGCAATT
TTGGCATACTACTATATGCAGCATAAAGAGGATCTCTTAGCAAGGTTTCTACATTGAGAAATTTGTCCAGGCTCTGATTT
TCATCGCTTAATTTATCATCTGATCGTCTACTGGAGATATATGTGATACCGTCTGGGAGATCATTTTTGTCTTAGGGTCA
AAAAGGAGAACTGTCCAAATTTNTCCTGTCCGCTGAACATAGCAAGATCCAGGCCTTCCCTTTGTCACGCTTGTACAAAA
ATGGNCATGTTGTCAAGAGTTTTGTAAAATTGAAGGGCTCATGTGAGTTATAATGCCCTCTAGCTGCTCTCGTGAGGAAA
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis