Browse Element(s) Details


Os.54818.1.S1_at

Description gb:AK106831.1
DB_XREF= gi:32992040
TID=Os.54818.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54818 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-F09, full insert sequence.
FL= gb:AK106831.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3967010/11seryl-tRNA synthetase family protein, expressed
LOC_Os02g523901/11Peptidase M16 inactive domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39630OsAffx.19257.1.S1_at11/1111+23100472..23102972hypothetical protein
LOC_Os11g39640Os.27217.1.A1_at11/1111+23109534..23111540Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g39640OsAffx.13463.1.S1_at1/1111+23109534..23111540Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g39650Os.20727.1.S1_at11/1111+23113750..23117939St12p protein, putative, expressed
LOC_Os11g39660OsAffx.19258.2.S1_x_at11/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39660OsAffx.24518.2.S1_x_at2/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39660Os.57200.1.S1_x_at1/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39670Os.54818.1.S1_at10/1111+23126858..23131260seryl-tRNA synthetase family protein, expressed
LOC_Os11g39670Os.53877.1.S1_x_at10/1111+23126858..23131260seryl-tRNA synthetase family protein, expressed
LOC_Os11g39680OsAffx.31391.1.S1_at11/1111+23134150..23134689hypothetical protein
LOC_Os11g39690OsAffx.7359.1.S1_at11/1111+23138929..23139138hypothetical protein
LOC_Os11g39690OsAffx.7359.1.S1_x_at11/1111+23138929..23139138hypothetical protein
LOC_Os11g39699OsAffx.30582.1.S1_s_at2/1111+23146586..23147544NA
LOC_Os11g39710NANA11+23150100..23151986retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006434biological_processseryl-tRNA aminoacylation
GO:0006508biological_processproteolysis
GO:0007005biological_processmitochondrion organization and biogenesis
GO:0009658biological_processchloroplast organization and biogenesis
GO:0043039biological_processtRNA aminoacylation
GO:0051605biological_processproteolysis during protein maturation
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004222molecular_functionmetalloendopeptidase activity
GO:0004828molecular_functionserine-tRNA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54818.1.S1_at--531--10231Chr11:23130741..23130765 (25 bp)
TTTGGCAACATATCCAGGTTAACTA
LOC_Os11g39670
Os.54818.1.S1_at--954--3472Chr11:23130755..23130779 (25 bp)
CAGGTTAACTATTTCCTCCTTGTCA
LOC_Os11g39670
Os.54818.1.S1_at--1049--1251Chr11:23130838..23130862 (25 bp)
AGATTCTTTGGACTAGTATGCTTTC
LOC_Os11g39670
Os.54818.1.S1_at--760--4871Chr11:23130857..23130881 (25 bp)
GCTTTCCATCAGTTTTAATAGTTTG
LOC_Os11g39670
Os.54818.1.S1_at--878--7051Chr11:23130942..23130966 (25 bp)
GTAACTCCACATATGCCCATTGTAT
LOC_Os11g39670
Os.54818.1.S1_at--1150--3591Chr11:23130959..23130983 (25 bp)
CATTGTATTGGATATCCCTTGCGAA
LOC_Os11g39670
Os.54818.1.S1_at--338--10691Chr11:23130977..23131001 (25 bp)
TTGCGAAATATTTCCTCCGTCCCAA
LOC_Os11g39670
Os.54818.1.S1_at--35--10291Chr11:23130987..23131011 (25 bp)
TTTCCTCCGTCCCAAAGTATATGGT
LOC_Os11g39670
Os.54818.1.S1_at--641--2031Chr11:23131061..23131085 (25 bp)
ACTAGGATGTATTTCATTCACCCAA
LOC_Os11g39670
Os.54818.1.S1_at--929--271Chr11:23131160..23131184 (25 bp)
ATAGTACTAGTGCTTTGTCAGTTTA
LOC_Os11g39670
Os.54818.1.S1_at--204--6831NONE
GTTTAATATCTGTCCGTTTACGGCT
NONE
Target Sequence 
TTTGGCAACATATCCAGGTTAACTATTTCCTCCTTGTCAAAATATAGCAAACTTGGAATGGATATATAGTCCAATGATTA
TGGACAAGGGGCTAGCCAGATTCTTTGGACTAGTATGCTTTCCATCAGTTTTAATAGTTTGCTATATTTTGGGATGGAGG
GAGTAGTTGAACAAACTCAGTATTACACTTGTAGTTAACTGGTAACTCCACATATGCCCATTGTATTGGATATCCCTTGC
GAAATATTTCCTCCGTCCCAAAGTATATGGTTTTTAGGTGGATGAGACATCTTAATGCTATGAATCTGAACAGATTTAGT
ACTAGGATGTATTTCATTCACCCAAAATATGTTATACTTTGGGATGGTGGGAGTATTTGTCCACGGGAGAACTATACCGG
AGTAGTTTGTGCTAGAACAATAGTACTAGTGCTTTGTCAGTTTAATATCTGTCCGTTTACGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54818.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis