Browse Element(s) Details


Os.27217.1.A1_at

Description gb:BX927523
DB_XREF= gi:41881649
DB_XREF=BX927523
CLONE=p514b05p5
TID=Os.27217.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27217 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_188919.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3964011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39590OsAffx.19256.2.S1_at2/1111+23084301..23089072NB-ARC domain containing protein
LOC_Os11g39600OsAffx.31389.1.S1_at11/1111+23091535..23093947resistance protein, putative
LOC_Os11g39609OsAffx.31390.1.S1_at11/1111+23095598..23096935F-box domain containing protein
LOC_Os11g39618OsAffx.30510.1.S1_at1/1111+23097296..23099440S1 self-incompatibility locus-linked pollen G211 protein, putative
LOC_Os11g39630OsAffx.19257.1.S1_at11/1111+23100472..23102972hypothetical protein
LOC_Os11g39640Os.27217.1.A1_at11/1111+23109534..23111540Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g39640OsAffx.13463.1.S1_at1/1111+23109534..23111540Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g39650Os.20727.1.S1_at11/1111+23113750..23117939St12p protein, putative, expressed
LOC_Os11g39660OsAffx.19258.2.S1_x_at11/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39660OsAffx.24518.2.S1_x_at2/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39660Os.57200.1.S1_x_at1/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39670Os.54818.1.S1_at10/1111+23126858..23131260seryl-tRNA synthetase family protein, expressed
LOC_Os11g39670Os.53877.1.S1_x_at10/1111+23126858..23131260seryl-tRNA synthetase family protein, expressed
LOC_Os11g39680OsAffx.31391.1.S1_at11/1111+23134150..23134689hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27217.1.A1_at--274--9331Chr11:23110766..23110790 (25 bp)
TCGCCAAGATCGCTCGACTGATGAA
LOC_Os11g39640
Os.27217.1.A1_at--706--2591Chr11:23110894..23110918 (25 bp)
AACGCCGACGAGATTTCACGGTGAA
LOC_Os11g39640
Os.27217.1.A1_at--512--191Chr11:23110906..23110930 (25 bp)
ATTTCACGGTGAATTGCTGCTCTTC
LOC_Os11g39640
Os.27217.1.A1_at--397--7351Chr11:23110914..23110938 (25 bp)
GTGAATTGCTGCTCTTCTGTGAAGG
LOC_Os11g39640
Os.27217.1.A1_at--783--6851Chr11:23110981..23111005 (25 bp)
GTTTGGTTTGGAGAGTTTTGTCACA
LOC_Os11g39640
Os.27217.1.A1_at--1080--10151Chr11:23111026..23111050 (25 bp)
TATCTTTCCTAAATCTTATGTGTGA
LOC_Os11g39640
Os.27217.1.A1_at--397--5911Chr11:23111070..23111094 (25 bp)
GAGCTTTGTGCATACACCGCGAAAC
LOC_Os11g39640
Os.27217.1.A1_at--876--3351Chr11:23111084..23111108 (25 bp)
CACCGCGAAACGTCAGAAATTGTAA
LOC_Os11g39640
Os.27217.1.A1_at--257--6271Chr11:23111132..23111156 (25 bp)
GATGTCTTTGTATGCGAGTTTGTAA
LOC_Os11g39640
Os.27217.1.A1_at--151--351Chr11:23111160..23111184 (25 bp)
ATAAAAGAGATCACTGCTGCCTGTT
LOC_Os11g39640
Os.27217.1.A1_at--151--4791Chr11:23111175..23111199 (25 bp)
GCTGCCTGTTCATTACAGTTCATGA
LOC_Os11g39640
Target Sequence 
TCGCCAAGATCGCTCGACTGATGAAATTCTCGGAAGTGTTGGAGATGGCCGGCATCGGAGCGACCAGGTCGGTGTCCTTC
GGCGGCCACGGCAGGTCCGGCCAGTCCGCCGCCGCCGNCGCCGGCAACAACGCCGACGAGATTTCACGGTGAATTGCTGC
TCTTCTGTGAAGGGATGAATCGCTGAAGGTTTCAGATTTTGGGAGACATGGAGGTGTTTGGTTTGGAGAGTTTTGTCACA
AGGGAAAGGTAAAAAAAGTTTATCTTTCCTAAATCTTATGTGTGATTAAGCAAATAAATAACATGAGCTTTGTGCATACA
CCGCGAAACGTCAGAAATTGTAAATATGAATTCCTGACAAAAAGGAGATGTCTTTGTATGCGAGTTTGTAAGATATAAAA
GAGATCACTGCTGCCTGTTCATTACAGTTCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27217.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis