Browse Element(s) Details


OsAffx.19257.1.S1_at

Description tigr:9639.m03616
TID=OsAffx.19257.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3958011/11hypothetical protein
LOC_Os11g3963011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39540Os.53400.1.S1_at3/1111+23052236..2305714014-3-3, putative, expressed
LOC_Os11g39550OsAffx.19256.1.S1_at11/1111+23063912..23074165NB-ARC domain containing protein
LOC_Os11g39550OsAffx.31389.1.S1_at11/1111+23063912..23074165NB-ARC domain containing protein
LOC_Os11g39559OsAffx.31390.1.S1_at11/1111+23075816..23077153F-box domain containing protein
LOC_Os11g39568NANA11+23077514..23079658S1 self-incompatibility locus-linked pollen G211 protein, putative
LOC_Os11g39580OsAffx.19257.1.S1_at11/1111+23080690..23083192hypothetical protein
LOC_Os11g39590OsAffx.19256.2.S1_at2/1111+23084301..23089072NB-ARC domain containing protein
LOC_Os11g39600OsAffx.31389.1.S1_at11/1111+23091535..23093947resistance protein, putative
LOC_Os11g39609OsAffx.31390.1.S1_at11/1111+23095598..23096935F-box domain containing protein
LOC_Os11g39618OsAffx.30510.1.S1_at1/1111+23097296..23099440S1 self-incompatibility locus-linked pollen G211 protein, putative
LOC_Os11g39630OsAffx.19257.1.S1_at11/1111+23100472..23102972hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19257.1.S1_at--70--1872Chr11:23100845..23100869 (25 bp)
ACGACGCCGATTGGCCTGATTGGGA
LOC_Os11g39630
OsAffx.19257.1.S1_at--321--8812Chr11:23100829..23100853 (25 bp)
TGATTGGGACGCCTTCGATCAAGAT
LOC_Os11g39630
OsAffx.19257.1.S1_at--434--372Chr11:23100791..23100815 (25 bp)
ATCAAGATTGGGACGCCGACACCGA
LOC_Os11g39630
OsAffx.19257.1.S1_at--994--5632Chr11:23100774..23100798 (25 bp)
GACACCGACAAGACTGCGGCATTGC
LOC_Os11g39630
OsAffx.19257.1.S1_at--1094--10552Chr11:23100675..23100699 (25 bp)
TTCTTCGTCGAGTGCGATCAGGCAG
LOC_Os11g39630
OsAffx.19257.1.S1_at--1027--7632Chr11:23100644..23100668 (25 bp)
GGGAGAAGCCGTGCACCAGCTGCTT
LOC_Os11g39630
OsAffx.19257.1.S1_at--634--9372Chr11:23100620..23100644 (25 bp)
TCGAGGGCTCGAAACCACGGAGTTT
LOC_Os11g39630
OsAffx.19257.1.S1_at--1100--1192Chr11:23100600..23100624 (25 bp)
AGTTTGTCGTCAGGCTCCATGAGGC
LOC_Os11g39630
OsAffx.19257.1.S1_at--1145--9912Chr11:23100570..23100594 (25 bp)
TACTGTACTTGCCATCGCAAGCTGA
LOC_Os11g39630
OsAffx.19257.1.S1_at--272--2132Chr11:23100533..23100557 (25 bp)
ACAGGGTGGAATGCTCCTACTGCCA
LOC_Os11g39630
OsAffx.19257.1.S1_at--807--2512Chr11:23100507..23100531 (25 bp)
AACTTCTTCCAAAATCTTGCCGACT
LOC_Os11g39630
Target Sequence 
ACGACGCCGATTGGCCTGATTGGGACGCCTTCGATCAAGATTGGGAGGGCTTCGATCAAGATTGGGACGCCGACACCGAC
AAGACTGCGGCATTGCAGGAGGAAGACGAGGAGCCGCCCGTCTCCATCGTCGCCGGCGAGACACCTCCGCAGCACGGCCC
TCTCCTCTCGTTCTTCGTCGAGTGCGATCAGGCAGGGAGAGGGGAGAAGCCGTGCACCAGCTGCTTCGAGGGCTCGAAAC
CACGGAGTTTGTCGTCAGGCTCCATGAGGCCCCACTACTGTACTTGCCATCGCAAGCTGATGCGCAGCAAGGACAGGGTG
GAATGCTCCTACTGCCACAACTTCTTCCAAAATCTTGCCGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis