Browse Element(s) Details


OsAffx.31391.1.S1_at

Description tigr:9639.m03622
TID=OsAffx.31391.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3968011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39640Os.27217.1.A1_at11/1111+23109534..23111540Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g39640OsAffx.13463.1.S1_at1/1111+23109534..23111540Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g39650Os.20727.1.S1_at11/1111+23113750..23117939St12p protein, putative, expressed
LOC_Os11g39660OsAffx.19258.2.S1_x_at11/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39660OsAffx.24518.2.S1_x_at2/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39660Os.57200.1.S1_x_at1/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39670Os.54818.1.S1_at10/1111+23126858..23131260seryl-tRNA synthetase family protein, expressed
LOC_Os11g39670Os.53877.1.S1_x_at10/1111+23126858..23131260seryl-tRNA synthetase family protein, expressed
LOC_Os11g39680OsAffx.31391.1.S1_at11/1111+23134150..23134689hypothetical protein
LOC_Os11g39690OsAffx.7359.1.S1_at11/1111+23138929..23139138hypothetical protein
LOC_Os11g39690OsAffx.7359.1.S1_x_at11/1111+23138929..23139138hypothetical protein
LOC_Os11g39699OsAffx.30582.1.S1_s_at2/1111+23146586..23147544NA
LOC_Os11g39710NANA11+23150100..23151986retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39720NANA11+23157166..23159845retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31391.1.S1_at--94--9011Chr11:23134286..23134310 (25 bp)
TGAAGTGGATCCTCGCGCAGAAGCG
LOC_Os11g39680
OsAffx.31391.1.S1_at--857--4111Chr11:23134301..23134325 (25 bp)
CGCAGAAGCGAGAGCCCTACACCAA
LOC_Os11g39680
OsAffx.31391.1.S1_at--831--2531Chr11:23134397..23134421 (25 bp)
AACTCAAGGCGAGCTGCAGGGACTC
LOC_Os11g39680
OsAffx.31391.1.S1_at--1022--4991Chr11:23134412..23134436 (25 bp)
GCAGGGACTCCATCCGCAGATCGAA
LOC_Os11g39680
OsAffx.31391.1.S1_at--91--1291Chr11:23134429..23134453 (25 bp)
AGATCGAACATCCTCCGCAAGGTCG
LOC_Os11g39680
OsAffx.31391.1.S1_at--104--5171Chr11:23134445..23134469 (25 bp)
GCAAGGTCGCGGACGACCGCTTCTT
LOC_Os11g39680
OsAffx.31391.1.S1_at--947--1791Chr11:23134460..23134484 (25 bp)
ACCGCTTCTTCGAGTACCAGAGCGA
LOC_Os11g39680
OsAffx.31391.1.S1_at--52--1731Chr11:23134475..23134499 (25 bp)
ACCAGAGCGAGGTCAGGGCCGCCAT
LOC_Os11g39680
OsAffx.31391.1.S1_at--1068--7771Chr11:23134555..23134579 (25 bp)
GGTCGCGCCAAGCTTAACGAGGCAT
LOC_Os11g39680
OsAffx.31391.1.S1_at--753--4091Chr11:23134583..23134607 (25 bp)
CGAAGTTGCGCGATGGCCTCCCGCT
LOC_Os11g39680
OsAffx.31391.1.S1_at--1012--1991Chr11:23134613..23134637 (25 bp)
ACTCTGACAGCGATGCGGATGAGGA
LOC_Os11g39680
Target Sequence 
TGAAGTGGATCCTCGCGCAGAAGCGAGAGCCCTACACCAACCCGGACGACATCGAGGGCTTCAAGATCAGCAGCAACCCC
AACAACGACAACGACGACGGGTTCCCGGAGGAACTCAAGGCGAGCTGCAGGGACTCCATCCGCAGATCGAACATCCTCCG
CAAGGTCGCGGACGACCGCTTCTTCGAGTACCAGAGCGAGGTCAGGGCCGCCATGGAGTCCAGCGGCCGCTTCTTGGTCG
ACGCCGGCTTCTTCGAGCGCAGGGCGAGGGGTCGCGCCAAGCTTAACGAGGCATGGGCGAAGTTGCGCGATGGCCTCCCG
CTCTCCGACTCTGACAGCGATGCGGATGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis