Browse Element(s) Details


OsAffx.7355.1.S1_at

Description tigr:9639.m03608
TID=OsAffx.7355.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Jacalin-like lectin domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3953010/11Jacalin-like lectin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39490OsAffx.7354.1.S1_at11/1111+23007041..23011803Jacalin-like lectin domain containing protein
LOC_Os11g39500OsAffx.31388.1.S1_at11/1111+23012951..23013340hypothetical protein
LOC_Os11g39510NANA11+23021147..23029240retrotransposon protein, putative, unclassified
LOC_Os11g39520OsAffx.19255.1.S1_at10/1111+23033794..23034773hypothetical protein
LOC_Os11g39530OsAffx.7355.1.S1_at10/1111+23035948..23044173Jacalin-like lectin domain containing protein, expressed
LOC_Os11g39540Os.53400.1.S1_at3/1111+23052236..2305714014-3-3, putative, expressed
LOC_Os11g39550OsAffx.19256.1.S1_at11/1111+23063912..23074165NB-ARC domain containing protein
LOC_Os11g39550OsAffx.31389.1.S1_at11/1111+23063912..23074165NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7355.1.S1_at--780--7671Chr11:23037222..23037246 (25 bp)
GGGTTTTCTTCATTCGATCGGTGTC
LOC_Os11g39530
OsAffx.7355.1.S1_at--1144--6391Chr11:23037207..23037231 (25 bp)
GATCGGTGTCTATGTTAGTCCCAAT
LOC_Os11g39530
OsAffx.7355.1.S1_at--206--10071Chr11:23037192..23037216 (25 bp)
TAGTCCCAATCGACCAACTCTTGAT
LOC_Os11g39530
OsAffx.7355.1.S1_at--1072--2711NONE
AAGCACTTACCAAGTTCGGGCCGTG
NONE
OsAffx.7355.1.S1_at--773--7811Chr11:23036892..23036916 (25 bp)
GGTACCTCACCGTTTAGAAAGCTTG
LOC_Os11g39530
OsAffx.7355.1.S1_at--1112--1111Chr11:23036858..23036882 (25 bp)
AGTGCAGATATCATCAACTCGCTTG
LOC_Os11g39530
OsAffx.7355.1.S1_at--888--9151Chr11:23036835..23036859 (25 bp)
TGCCTTCTCATACAACGACCATAAT
LOC_Os11g39530
OsAffx.7355.1.S1_at--489--10511Chr11:23036178..23036539 (25 bp)
TTCACGATTCGGCTTGGAGCTTTTG
LOC_Os11g39530
OsAffx.7355.1.S1_at--801--5491Chr11:23036132..23036156 (25 bp)
GAACAGTCGGTTCATTTGGCATGCT
LOC_Os11g39530
OsAffx.7355.1.S1_at--1039--9711Chr11:23036069..23036093 (25 bp)
TCAATCGCACCTATGGACCTTATGG
LOC_Os11g39530
OsAffx.7355.1.S1_at--270--5471Chr11:23036033..23036057 (25 bp)
GAACTCCATTCGTTGTTCCGGTGGA
LOC_Os11g39530
Target Sequence 
GGGTTTTCTTCATTCGATCGGTGTCTATGTTAGTCCCAATCGACCAACTCTTGATTTGAGCAGACATTTTAGGGATGCGT
TGCAAGCACTTACCAAGTTCGGGCCGTGGGGAGGCAGCGGAGACATGGATCGCGACATGGAGGTGGTACCTCACCGTTTA
GAAAGCTTGACAATTTGCAGTGCAGATATCATCAACTCGCTTGCCTTCTCATACAACGACCATAATGGGAAGCAACATAC
AGTTGGTCCATGGGGCGGTGATGGTGGCGCTGCTTTCACGATTCGGCTTGGAGCTTTTGAGCATATAAAGGGGCTGTCTG
GAACAGTCGGTTCATTTGGCATGCTACAAAATGTCATAACATCGCTTAAGTTCACGACGAATCTCAATCGCACCTATGGA
CCTTATGGAAAAGGAGGAGGAACTCCATTCGTTGTTCCGGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis