Browse Element(s) Details


OsAffx.19326.1.S1_at

Description tigr:9639.m03877
TID=OsAffx.19326.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4212011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42090Os.57560.1.S1_at11/1111+24837528..24843993Leucine Rich Repeat family protein, expressed
LOC_Os11g42090OsAffx.1238.1.S1_at1/1111+24837528..24843993Leucine Rich Repeat family protein, expressed
LOC_Os11g42100OsAffx.19324.1.S1_at11/1111+24857003..24859425Leucine Rich Repeat family protein, expressed
LOC_Os11g42110NANA11+24860073..24860558hypothetical protein
LOC_Os11g42120OsAffx.19326.1.S1_at11/1111+24866925..24867314hypothetical protein
LOC_Os11g42130NANA11+24870585..24873821transposon protein, putative, unclassified
LOC_Os11g42140NANA11+24874452..24880610transposon protein, putative, unclassified
LOC_Os11g42150OsAffx.7382.1.S1_at11/1111+24881400..24883829hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19326.1.S1_at--1124--6031Chr11:24867227..24867251 (25 bp)
GAGATCGACAGCTACATCAATTATC
LOC_Os11g42120
OsAffx.19326.1.S1_at--1030--151Chr11:24867208..24867232 (25 bp)
ATTATCAGACAATCAGGATGCCAGA
LOC_Os11g42120
OsAffx.19326.1.S1_at--1112--7972Chr11:24867193..24867217 (25 bp)
GGATGCCAGATGAAATATTCCCAAT
LOC_Os11g42120
OsAffx.19326.1.S1_at--397--1011Chr11:24867155..24867179 (25 bp)
AGGTTAGCATGCACGGACTTGTCTG
LOC_Os11g42120
OsAffx.19326.1.S1_at--341--2071Chr11:24867139..24867163 (25 bp)
ACTTGTCTGATCACAAAGGCGACCT
LOC_Os11g42120
OsAffx.19326.1.S1_at--512--9311Chr11:24867115..24867139 (25 bp)
TCCCTGTACCCATGGACCAGATCGA
LOC_Os11g42120
OsAffx.19326.1.S1_at--988--6551Chr11:24867089..24867113 (25 bp)
GATTACGTCGCCAAGATTTTTAGGG
LOC_Os11g42120
OsAffx.19326.1.S1_at--1159--2631Chr11:24867059..24867083 (25 bp)
AACCAGATTGACGATCAGTTCATGA
LOC_Os11g42120
OsAffx.19326.1.S1_at--1145--10011Chr11:24867030..24867054 (25 bp)
TAGAGACGGGATCCTGAATCAGTAC
LOC_Os11g42120
OsAffx.19326.1.S1_at--783--1171Chr11:24867010..24867034 (25 bp)
AGTACTACCGCAAAGGTTACGCGAT
LOC_Os11g42120
OsAffx.19326.1.S1_at--27--10471Chr11:24866994..24867018 (25 bp)
TTACGCGATGCGAAAGGCCACCGAT
LOC_Os11g42120
Target Sequence 
GAGATCGACAGCTACATCAATTATCAGACAATCAGGATGCCAGATGAAATATTCCCAATAGTAAGCAAGGAGAGGTTAGC
ATGCACGGACTTGTCTGATCACAAAGGCGACCTCCCTGTACCCATGGACCAGATCGACGATTACGTCGCCAAGATTTTTA
GGGAGATAAACCAGATTGACGATCAGTTCATGAAGCATAGAGACGGGATCCTGAATCAGTACTACCGCAAAGGTTACGCG
ATGCGAAAGGCCACCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis