Browse Element(s) Details


OsAffx.19338.1.S1_at

Description tigr:9639.m03938
TID=OsAffx.19338.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4268011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42650Os.45173.5.S1_x_at4/1111+25177309..25191048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42650Os.47999.3.A1_x_at2/1111+25177309..25191048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42650Os.47999.2.A1_x_at2/1111+25177309..25191048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42650Os.45173.1.S1_x_at1/1111+25177309..25191048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42660OsAffx.31444.1.S1_at11/1111+25193894..25198668Leucine Rich Repeat family protein, expressed
LOC_Os11g42670OsAffx.19337.1.S1_at11/1111+25201725..25202292hypothetical protein
LOC_Os11g42680OsAffx.19338.1.S1_at11/1111+25207525..25208238hypothetical protein
LOC_Os11g42690OsAffx.19339.1.S1_at11/1111+25210018..25210251hypothetical protein
LOC_Os11g42700OsAffx.19340.3.S1_at11/1111+25219226..25220437hypothetical protein
LOC_Os11g42710NANA11+25222702..25228060retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g42720OsAffx.19340.2.S1_at3/1111+25230969..25235648retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19338.1.S1_at--442--4771Chr11:25207665..25207689 (25 bp)
GCTGCTTCTTTCATCGCTTGAGAAT
LOC_Os11g42680
OsAffx.19338.1.S1_at--917--91Chr11:25207718..25207742 (25 bp)
ATTCTACCTGGCTGGATCGTGCTAA
LOC_Os11g42680
OsAffx.19338.1.S1_at--319--511Chr11:25207733..25207757 (25 bp)
ATCGTGCTAACCTACAAATTCTCGC
LOC_Os11g42680
OsAffx.19338.1.S1_at--953--5551Chr11:25207761..25207785 (25 bp)
GAAACCAAGAATCCACTGCCTAGTA
LOC_Os11g42680
OsAffx.19338.1.S1_at--939--10051Chr11:25207781..25207805 (25 bp)
TAGTACTCTCACACAACTCTTACGA
LOC_Os11g42680
OsAffx.19338.1.S1_at--372--5911Chr11:25207843..25207867 (25 bp)
GAGCTCAACATTCTTATCGTCGAGT
LOC_Os11g42680
OsAffx.19338.1.S1_at--909--9371Chr11:25207862..25207886 (25 bp)
TCGAGTGCTGTACTGTCACCGATAT
LOC_Os11g42680
OsAffx.19338.1.S1_at--15--1231Chr11:25207994..25208018 (25 bp)
AGTTCAATGGTGACCACGTCCCTGA
LOC_Os11g42680
OsAffx.19338.1.S1_at--336--2731Chr11:25208050..25208074 (25 bp)
AAGCAACCTATTCTTACTCTCAAGC
LOC_Os11g42680
OsAffx.19338.1.S1_at--209--6331Chr11:25208128..25208152 (25 bp)
GATGCAAGGTTTCCAGCATGCTCCT
LOC_Os11g42680
OsAffx.19338.1.S1_at--436--2731Chr11:25208161..25208185 (25 bp)
AAGAAAAAGTACTGGCCTGCCGCAA
LOC_Os11g42680
Target Sequence 
GCTGCTTCTTTCATCGCTTGAGAATGCTAAAAACATTTCCAAGGTGACTCTGCATTCTACCTGGCTGGATCGTGCTAACC
TACAAATTCTCGCCAAGAAACCAAGAATCCACTGCCTAGTACTCTCACACAACTCTTACGACGAAAGCCAGCTTATCTTC
AACAAAAATGAGTTTCTCGAGCTCAACATTCTTATCGTCGAGTGCTGTACTGTCACCGATATCCGCTTCACCGACGGAGC
AGCTCCTAAACTCGAGAAGATCGTCTGGTCTTTCACCAAGATGAATTCTCTCTCAGGCATCAAAAACCTACCGATGCTAA
AGGAGCTCGAGTTCAATGGTGACCACGTCCCTGATCAGGTGAGGGATGAAATAAAAGCACATAGAAAGCAACCTATTCTT
ACTCTCAAGCAGCCGCAGCATCAAGACCAAGAAAATGGAACGGCACAAGAAGATGATGATGACGATGCAAGGTTTCCAGC
ATGCTCCTGGTTGTTGAAGAAAAAGTACTGGCCTGCCGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis