Browse Element(s) Details


OsAffx.19339.1.S1_at

Description tigr:9639.m03939
TID=OsAffx.19339.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4269011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42650Os.45173.5.S1_x_at4/1111+25177309..25191048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42650Os.47999.3.A1_x_at2/1111+25177309..25191048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42650Os.47999.2.A1_x_at2/1111+25177309..25191048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42650Os.45173.1.S1_x_at1/1111+25177309..25191048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42660OsAffx.31444.1.S1_at11/1111+25193894..25198668Leucine Rich Repeat family protein, expressed
LOC_Os11g42670OsAffx.19337.1.S1_at11/1111+25201725..25202292hypothetical protein
LOC_Os11g42680OsAffx.19338.1.S1_at11/1111+25207525..25208238hypothetical protein
LOC_Os11g42690OsAffx.19339.1.S1_at11/1111+25210018..25210251hypothetical protein
LOC_Os11g42700OsAffx.19340.3.S1_at11/1111+25219226..25220437hypothetical protein
LOC_Os11g42710NANA11+25222702..25228060retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g42720OsAffx.19340.2.S1_at3/1111+25230969..25235648retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19339.1.S1_at--81--2451Chr11:25210194..25210218 (25 bp)
AAAATGGTGGCTTCACGGCGACAGC
LOC_Os11g42690
OsAffx.19339.1.S1_at--491--811Chr11:25210191..25210215 (25 bp)
ATGGTGGCTTCACGGCGACAGCCCA
LOC_Os11g42690
OsAffx.19339.1.S1_at--18--4611Chr11:25210177..25210201 (25 bp)
GCGACAGCCCACTCGGGTCGATGAG
LOC_Os11g42690
OsAffx.19339.1.S1_at--239--1671Chr11:25210172..25210196 (25 bp)
AGCCCACTCGGGTCGATGAGAAGCT
LOC_Os11g42690
OsAffx.19339.1.S1_at--139--3331Chr11:25210168..25210192 (25 bp)
CACTCGGGTCGATGAGAAGCTAGAA
LOC_Os11g42690
OsAffx.19339.1.S1_at--1072--1431Chr11:25210147..25210171 (25 bp)
AGAAGAAGATATCCGTGAGGTCACT
LOC_Os11g42690
OsAffx.19339.1.S1_at--966--531Chr11:25210137..25210161 (25 bp)
ATCCGTGAGGTCACTTGGGTTCTTG
LOC_Os11g42690
OsAffx.19339.1.S1_at--658--10831Chr11:25210115..25210139 (25 bp)
TTGGGATGGTTCACGCACAAGGAAT
LOC_Os11g42690
OsAffx.19339.1.S1_at--894--6231Chr11:25210111..25210135 (25 bp)
GATGGTTCACGCACAAGGAATCGAA
LOC_Os11g42690
OsAffx.19339.1.S1_at--416--4111Chr11:25210102..25210126 (25 bp)
CGCACAAGGAATCGAACAAGGGCTC
LOC_Os11g42690
OsAffx.19339.1.S1_at--677--3091Chr11:25210064..25210088 (25 bp)
AATTGGAGGATGGAGCCCGGTGGCC
LOC_Os11g42690
Target Sequence 
AAAATGGTGGCTTCACGGCGACAGCCCACTCGGGTCGATGAGAAGCTAGAAGAAGATATCCGTGAGGTCACTTGGGTTCT
TGGGATGGTTCACGCACAAGGAATCGAACAAGGGCTCACCGGAGAGGGAGAATTGGAGGATGGAGCCCGGTGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19339.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis