Browse Element(s) Details


OsAffx.19374.1.S1_at

Description tigr:9639.m04155
TID=OsAffx.19374.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4476011/11hypothetical protein
LOC_Os04g193001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44730NANA11+26557577..26564307retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44740NANA11+26566497..26568124retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44750NANA11+26571190..26581959retrotransposon protein, putative, unclassified
LOC_Os11g44760OsAffx.19374.1.S1_at11/1111+26582184..26583071hypothetical protein
LOC_Os11g44770NANA11+26587236..26593178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44780NANA11+26594524..26598066retrotransposon protein, putative, unclassified
LOC_Os11g44790OsAffx.31478.1.S1_at7/1111+26598839..26601742EAP30 family protein
LOC_Os11g44800Os.49151.1.S1_at11/1111+26605149..26606026expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19374.1.S1_at--781--10291Chr11:26582678..26582702 (25 bp)
TTTCCTTTGGGTAAATTCTTGCTAG
LOC_Os11g44760
OsAffx.19374.1.S1_at--49--1011Chr11:26582655..26582679 (25 bp)
AGGATATCTGTACCAGACCCTAAAT
LOC_Os11g44760
OsAffx.19374.1.S1_at--554--5811Chr11:26582640..26582664 (25 bp)
GACCCTAAATTTGGCATCAGCAAGA
LOC_Os11g44760
OsAffx.19374.1.S1_at--21--3171Chr11:26582616..26582640 (25 bp)
AATTGCTTCAGGCTCTGCTATCAAT
LOC_Os11g44760
OsAffx.19374.1.S1_at--64--3831Chr11:26582602..26582626 (25 bp)
CTGCTATCAATACTGGTGGCCCATG
LOC_Os11g44760
OsAffx.19374.1.S1_at--534--7731Chr11:26582538..26582562 (25 bp)
GGTGGTTGATAGACCAGCACTGACT
LOC_Os11g44760
OsAffx.19374.1.S1_at--719--1871Chr11:26582520..26582544 (25 bp)
ACTGACTAAGGCTGAATTCCCAAGA
LOC_Os11g44760
OsAffx.19374.1.S1_at--120--2811Chr11:26582499..26582523 (25 bp)
AAGATCCCAGCCGATCATAGATGAG
LOC_Os11g44760
OsAffx.19374.1.S1_at--148--6211Chr11:26582432..26582456 (25 bp)
GAGGCAGCATCTACATACGCCGGAT
LOC_Os11g44760
OsAffx.19374.1.S1_at--11--6811Chr11:26582403..26582427 (25 bp)
GTTATTGGCTGAACTCTTTAAGGAT
LOC_Os11g44760
OsAffx.19374.1.S1_at--904--9752Chr11:26582385..26582409 (25 bp)
TAAGGATTGGTTCGGCAACTTCTAT
LOC_Os11g44760
Target Sequence 
TTTCCTTTGGGTAAATTCTTGCTAGGATATCTGTACCAGACCCTAAATTTGGCATCAGCAAGAATTGCTTCAGGCTCTGC
TATCAATACTGGTGGCCCATGGTGGTTGTTACAGACTTGGTTGAATTTGCATACCACGAGGGTGGTTGATAGACCAGCAC
TGACTAAGGCTGAATTCCCAAGATCCCAGCCGATCATAGATGAGGATGGCCAAGAGATCACAACTCGCCGATGTATGTCT
TTTGGAGAGGCAGCATCTACATACGCCGGATCCAAGTTATTGGCTGAACTCTTTAAGGATTGGTTCGGCAACTTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis