Browse Element(s) Details


Os.49151.1.S1_at

Description gb:AK108290.1
DB_XREF= gi:32993499
TID=Os.49151.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49151 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-D12, full insert sequence.
FL= gb:AK108290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4480011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44750NANA11+26571190..26581959retrotransposon protein, putative, unclassified
LOC_Os11g44760OsAffx.19374.1.S1_at11/1111+26582184..26583071hypothetical protein
LOC_Os11g44770NANA11+26587236..26593178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44780NANA11+26594524..26598066retrotransposon protein, putative, unclassified
LOC_Os11g44790OsAffx.31478.1.S1_at7/1111+26598839..26601742EAP30 family protein
LOC_Os11g44800Os.49151.1.S1_at11/1111+26605149..26606026expressed protein
LOC_Os11g44810Os.12735.1.S1_at11/1111+26609579..26611197auxin-repressed protein-like protein ARP1, putative, expressed
LOC_Os11g44810Os.12735.1.S1_s_at11/1111+26609579..26611197auxin-repressed protein-like protein ARP1, putative, expressed
LOC_Os11g44820OsAffx.7415.1.S1_at11/1111+26616130..26616969expressed protein
LOC_Os11g44830OsAffx.31479.1.S1_x_at11/1111+26622111..26628197AT hook motif-containing protein, putative, expressed
LOC_Os11g44830OsAffx.31479.4.S1_x_at9/1111+26622111..26628197AT hook motif-containing protein, putative, expressed
LOC_Os11g44840OsAffx.31479.5.S1_x_at9/1111+26629929..26634029hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49151.1.S1_at--500--4171Chr11:26605450..26605474 (25 bp)
CGCCATGAGCTGCAGCCGAGCACGA
LOC_Os11g44800
Os.49151.1.S1_at--1025--3591Chr11:26605722..26605746 (25 bp)
CATTGCCCACGCAGACACGGCGTGT
LOC_Os11g44800
Os.49151.1.S1_at--950--1851Chr11:26605768..26605792 (25 bp)
ACGACCACCGTGAATGTCGTCGTCT
LOC_Os11g44800
Os.49151.1.S1_at--404--10631Chr11:26605807..26605831 (25 bp)
TTCGCCGGGTTTGTTGTTGTCTCCA
LOC_Os11g44800
Os.49151.1.S1_at--893--8811Chr11:26605818..26605842 (25 bp)
TGTTGTTGTCTCCATCTCCATGGTT
LOC_Os11g44800
Os.49151.1.S1_at--611--4331Chr11:26605829..26605853 (25 bp)
CCATCTCCATGGTTTCACGCAAGAA
LOC_Os11g44800
Os.49151.1.S1_at--1019--471Chr11:26605857..26605881 (25 bp)
ATCTGATCGACGGACAGTAGTGCAA
LOC_Os11g44800
Os.49151.1.S1_at--700--6871Chr11:26605896..26605920 (25 bp)
GTATTGATACGTATGTGTGTGCAAA
LOC_Os11g44800
Os.49151.1.S1_at--413--7471Chr11:26605912..26605936 (25 bp)
GTGTGCAAAAGAACTCTCAGTGTAG
LOC_Os11g44800
Os.49151.1.S1_at--616--1431Chr11:26605921..26605945 (25 bp)
AGAACTCTCAGTGTAGTCGCTTTAC
LOC_Os11g44800
Os.49151.1.S1_at--29--4071Chr11:26605948..26605972 (25 bp)
CGAGTTGCATGTGCAGTTATGGGAA
LOC_Os11g44800
Target Sequence 
CGCCATGAGCTGCAGCCGAGCACGACGGAGACGACGATGGCGGCGCGGCTGCCGCCGGGGGCGAGGGAGGCGGCGGACGG
GCTCGACGGCGTGCTCCGGGAGGCGCACGAGCTCGCCGTCGCGTTCAGCCAGAGCGGCGGCGGCGGCGGCAAGAAGACGG
TGCGGCGGCGCCTCGTCTGCTGGGCGCGGCGGGTGGTCGGCGCCCGGCGGGACGCCGAGAGGCTCGCCAGCGTCCTGANC
AGGATCGACTTCTACCTCTCGCTCTACCCCGCCATTGCCCACGCAGACACGGCGTGTCGCGTGGACCGGCTGCTGTGGAC
GACCACCGTGAATGTCGTCGTCTCCNCCGCCGTCGCCTTCGCCGGGTTTGTTGTTGTCTCCATCTCCATGGTTTCACGCA
AGAAATAATCTGATCGACGGACAGTAGTGCAAACNCTGGCTGATNTGTATTGATACGTATGTGTGTGCAAAAGAACTCTC
AGTGTAGTCGCTTTACNGCGAGTTGCATGTGCAGTTATGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis