Browse Element(s) Details


OsAffx.19394.1.S1_at

Description tigr:9639.m04246
TID=OsAffx.19394.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4564011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45580OsAffx.31496.1.S1_at11/1111+27077205..27082227hypothetical protein
LOC_Os11g45590Os.17168.1.A1_at11/1111+27084173..27089421transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g45600OsAffx.31497.1.S1_at11/1111+27090023..27091090rust resistance protein Rp1-dp8, putative
LOC_Os11g45610NANA11+27091497..27096307retrotransposon protein, putative, unclassified, expressed
LOC_Os11g45620OsAffx.31498.1.S1_at11/1111+27096534..27098953Lr21, putative
LOC_Os11g45630NANA11+27100216..27100775hypothetical protein
LOC_Os11g45640OsAffx.19394.1.S1_at11/1111+27102090..27102851hypothetical protein
LOC_Os11g45650NANA11+27105230..27108548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45660Os.46053.2.S1_x_at10/1111+27109751..27112983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45670Os.47463.1.S1_x_at6/1111+27115009..27118709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45670Os.14491.2.S1_x_at4/1111+27115009..27118709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45680NANA11+27123274..27126512transposon protein, putative, unclassified
LOC_Os11g45690NANA11+27127158..27133314transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19394.1.S1_at--808--7971Chr11:27102797..27102821 (25 bp)
GGATCCGAGGATCCTTGCTGGTATA
LOC_Os11g45640
OsAffx.19394.1.S1_at--1059--4311Chr11:27102785..27102809 (25 bp)
CCTTGCTGGTATAGATCGGGATTAT
LOC_Os11g45640
OsAffx.19394.1.S1_at--869--7931Chr11:27102767..27102791 (25 bp)
GGATTATGCAGGTCGTTGACGCCTT
LOC_Os11g45640
OsAffx.19394.1.S1_at--777--10751Chr11:27102752..27102776 (25 bp)
TTGACGCCTTGGGATGCAGTGCTCC
LOC_Os11g45640
OsAffx.19394.1.S1_at--821--9431Chr11:27102695..27102719 (25 bp)
TCGGTGGCACCAAGTCAGGGAATCT
LOC_Os11g45640
OsAffx.19394.1.S1_at--178--8611Chr11:27102623..27102647 (25 bp)
TGGTGCTACGATGAATGCCGCCGGC
LOC_Os11g45640
OsAffx.19394.1.S1_at--481--2551Chr11:27102216..27102240 (25 bp)
AACTGCATTTGGCTCGGCCTGTAAA
LOC_Os11g45640
OsAffx.19394.1.S1_at--262--9451Chr11:27102203..27102227 (25 bp)
TCGGCCTGTAAAACACAGCCCAATC
LOC_Os11g45640
OsAffx.19394.1.S1_at--132--3371Chr11:27102188..27102212 (25 bp)
CAGCCCAATCCCGTTCATAAAAGAA
LOC_Os11g45640
OsAffx.19394.1.S1_at--22--8651Chr11:27102138..27102162 (25 bp)
TGGGCCGAAGGCCATTCCAAATCAC
LOC_Os11g45640
OsAffx.19394.1.S1_at--713--4431Chr11:27102128..27102152 (25 bp)
GCCATTCCAAATCACTCGTCTAAAG
LOC_Os11g45640
Target Sequence 
GGATCCGAGGATCCTTGCTGGTATAGATCGGGATTATGCAGGTCGTTGACGCCTTGGGATGCAGTGCTCCCATGGGGCTC
AGATGGTGGCTCGATGTGGTCGTCGGTGGCACCAAGTCAGGGAATCTCGGGGAGAGGAGAAGCCGAAGAGGTAGAGCAGG
GAGAGAGGGTGCCGTGGTGCTACGATGAATGCCGCCGGCTCTGGGGAGGAATAGGACACAGAGAAGAAACTAGAAAGGGG
AGCTGGGGAGAGGAGGAAGAAGAGGGGGTTAAGGACGAAAATCGTATTCGGTGTAAAGTTAACGGACCTTATATGAACTT
ATTCCAAACTGCATTTGGCTCGGCCTGTAAAACACAGCCCAATCCCGTTCATAAAAGAAGGGCCCATTACGTAGGGAGTT
GGGCTGGGCCGAAGGCCATTCCAAATCACTCGTCTAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis