Browse Element(s) Details


OsAffx.19462.1.S1_at

Description tigr:9640.m00222
TID=OsAffx.19462.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0312011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03070Os.10524.2.S1_at11/1112+1155635..1157563FHA domain containing protein, expressed
LOC_Os12g03070Os.10524.1.S1_x_at10/1112+1155635..1157563FHA domain containing protein, expressed
LOC_Os12g03080Os.50512.1.S1_at10/1112+1157566..1164277NB-ARC domain containing protein, expressed
LOC_Os12g03090Os.9193.1.S1_s_at11/1112+1168638..116946040S ribosomal protein S16, putative, expressed
LOC_Os12g03090Os.37737.1.S1_at11/1112+1168638..116946040S ribosomal protein S16, putative, expressed
LOC_Os12g03100Os.15794.1.S1_at11/1112+1171749..1174786secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os12g03110Os.16784.1.S1_at8/1112+1179462..1180200ZF-HD protein dimerisation region containing protein
LOC_Os12g03120OsAffx.19462.1.S1_at11/1112+1182405..1182748hypothetical protein
LOC_Os12g03130Os.48443.1.S1_at11/1112+1188043..1190508CDC45-like protein, expressed
LOC_Os12g03140OsAffx.19463.1.S1_at7/1112+1191232..1192383hypothetical protein
LOC_Os12g03150Os.3389.2.S1_at11/1112+1199560..1200971Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g03160OsAffx.13097.1.S1_s_at11/1112+1202491..1205222hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19462.1.S1_at--39--5031Chr12:1182593..1182617 (25 bp)
GCAGTTTGGGAAACCCTGATGGCGT
LOC_Os12g03120
OsAffx.19462.1.S1_at--184--9371Chr12:1182597..1182621 (25 bp)
TTTGGGAAACCCTGATGGCGTCTTG
LOC_Os12g03120
OsAffx.19462.1.S1_at--42--7631Chr12:1182600..1182624 (25 bp)
GGGAAACCCTGATGGCGTCTTGCTG
LOC_Os12g03120
OsAffx.19462.1.S1_at--725--2611Chr12:1182604..1182628 (25 bp)
AACCCTGATGGCGTCTTGCTGCTTT
LOC_Os12g03120
OsAffx.19462.1.S1_at--334--3871Chr12:1182608..1182632 (25 bp)
CTGATGGCGTCTTGCTGCTTTGGTT
LOC_Os12g03120
OsAffx.19462.1.S1_at--731--4752Chr12:1182621..1182645 (25 bp)
GCTGCTTTGGTTGGTCTACTTTTAT
LOC_Os12g03120
OsAffx.19462.1.S1_at--172--6632Chr12:1182630..1182654 (25 bp)
GTTGGTCTACTTTTATGAGCATGCA
LOC_Os12g03120
OsAffx.19462.1.S1_at--1035--7152Chr12:1182634..1182658 (25 bp)
GTCTACTTTTATGAGCATGCATGGA
LOC_Os12g03120
OsAffx.19462.1.S1_at--909--1532Chr12:1182647..1182671 (25 bp)
AGCATGCATGGAATAGCGTTTAATA
LOC_Os12g03120
OsAffx.19462.1.S1_at--557--8192Chr12:1182656..1182680 (25 bp)
GGAATAGCGTTTAATATTGGATTTT
LOC_Os12g03120
OsAffx.19462.1.S1_at--455--351Chr12:1182692..1182716 (25 bp)
ATAAGTTTGGAGTCATTGAGTCAAC
LOC_Os12g03120
Target Sequence 
GCAGTTTGGGAAACCCTGATGGCGTCTTGCTGCTTTGGTTGGTCTACTTTTATGAGCATGCATGGAATAGCGTTTAATAT
TGGATTTTTATTGAAATGGATAAGTTTGGAGTCATTGAGTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis