Browse Element(s) Details


OsAffx.19499.1.S1_at

Description tigr:9640.m00415
TID=OsAffx.19499.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0496011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04920Os.37680.1.S1_at2/1112+2115499..2117461GRF zinc finger family protein
LOC_Os12g04930Os.14713.1.S1_at11/1112+2120024..2123287SPRY domain containing protein, expressed
LOC_Os12g04940Os.18447.1.S1_at3/1112+2127574..2134180expressed protein
LOC_Os12g04950NANA12+2136931..2138890retrotransposon, putative, centromere-specific
LOC_Os12g04960OsAffx.19499.1.S1_at11/1112+2139895..2142972hypothetical protein
LOC_Os12g04970NANA12+2147803..2149470retrotransposon protein, putative, unclassified
LOC_Os12g04980Os.13051.1.S1_at11/1112+2152131..2157087Meiotic recombination protein DMC1 homolog, putative, expressed
LOC_Os12g04990Os.18732.1.S1_at11/1112+2160590..2169061AMP-binding enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19499.1.S1_at--558--10791Chr12:2140494..2140518 (25 bp)
TTGTCTGGGCACTCTACGCGGACTT
LOC_Os12g04960
OsAffx.19499.1.S1_at--815--9951Chr12:2140044..2140469 (25 bp)
TACCTCGTTGTTCAGGACGGCTACT
LOC_Os12g04960
OsAffx.19499.1.S1_at--56--5751Chr12:2140197..2140221 (25 bp)
GACGGCTACTGCGTTTTCGAACGAA
LOC_Os12g04960
OsAffx.19499.1.S1_at--1003--6791Chr12:2140185..2140209 (25 bp)
GTTTTCGAACGAAGGCTTGCACCTC
LOC_Os12g04960
OsAffx.19499.1.S1_at--19--4591Chr12:2140119..2140143 (25 bp)
GCGCAGGACGACTACTGTGTTATCG
LOC_Os12g04960
OsAffx.19499.1.S1_at--549--3891Chr12:2140105..2140129 (25 bp)
CTGTGTTATCGACTGGAGGCTTGCA
LOC_Os12g04960
OsAffx.19499.1.S1_at--284--5011Chr12:2140033..2140057 (25 bp)
GCAGGACGGCTACTGCATTGCCGAT
LOC_Os12g04960
OsAffx.19499.1.S1_at--1017--71Chr12:2140017..2140041 (25 bp)
ATTGCCGATCGGAAGCTTGCACCTT
LOC_Os12g04960
OsAffx.19499.1.S1_at--298--2871Chr12:2139967..2139991 (25 bp)
AAGTGATCCGCTCCTTGCGGAGGAT
LOC_Os12g04960
OsAffx.19499.1.S1_at--237--10611Chr12:2139953..2139977 (25 bp)
TTGCGGAGGATAGCCGGACGTCTAC
LOC_Os12g04960
OsAffx.19499.1.S1_at--617--8111Chr12:2139938..2139962 (25 bp)
GGACGTCTACGTCGATGCCTAGCGA
LOC_Os12g04960
Target Sequence 
TTGTCTGGGCACTCTACGCGGACTTTGCCACGTACTCGGGGGCTTCGCCTACCTCGTTGTTCAGGACGGCTACTGCGTTT
TCGAACGAAGGCTTGCACCTCCAAGCCGACCGCATACGCCGCCGCCGGGTGATCTGCTCCCCGCGCAGGACGACTACTGT
GTTATCGACTGGAGGCTTGCACCTTCGGGCCGACCGCATACACCGCCTCAGGGTGATCCGTTCCCCGCGCAGGACGGCTA
CTGCATTGCCGATCGGAAGCTTGCACCTTCGAGCCAACCGCCTACACCGCCGCCAAGTGATCCGCTCCTTGCGGAGGATA
GCCGGACGTCTACGTCGATGCCTAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis