Browse Element(s) Details


Os.37680.1.S1_at

Description gb:CB680157
DB_XREF= gi:29683882
DB_XREF=OSJNEf04I04.f
CLONE=OSJNEf04I04
TID=Os.37680.1
CNT=13
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.37680 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with strong similarity to protein pir:T47458 (A.thaliana) T47458 hypothetical protein T14D3.120 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g049202/11GRF zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04870OsAffx.19498.1.S1_at11/1112+2090556..2091092hypothetical protein
LOC_Os12g04880Os.51897.1.S1_x_at11/1112+2092432..2096998retrotransposon protein, putative, unclassified, expressed
LOC_Os12g04880Os.26788.1.S1_at11/1112+2092432..2096998retrotransposon protein, putative, unclassified, expressed
LOC_Os12g04880Os.6588.1.A1_x_at11/1112+2092432..2096998retrotransposon protein, putative, unclassified, expressed
LOC_Os12g04890OsAffx.29313.1.S1_at1/1112+2100030..2101631hypothetical protein
LOC_Os12g04900Os.27691.1.S1_x_at1/1112+2106317..2107273retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04910Os.27691.1.S1_x_at1/1112+2107523..2112084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04920Os.37680.1.S1_at2/1112+2115499..2117461GRF zinc finger family protein
LOC_Os12g04930Os.14713.1.S1_at11/1112+2120024..2123287SPRY domain containing protein, expressed
LOC_Os12g04940Os.18447.1.S1_at3/1112+2127574..2134180expressed protein
LOC_Os12g04950NANA12+2136931..2138890retrotransposon, putative, centromere-specific
LOC_Os12g04960OsAffx.19499.1.S1_at11/1112+2139895..2142972hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37680.1.S1_at--393--2851Chr12:2117146..2117170 (25 bp)
AAGTCTCGCCGTGGCCAGGACTGAG
LOC_Os12g04920
Os.37680.1.S1_at--1049--3852Chr12:2117166..2117190 (25 bp)
CTGAGCTAGGGTTTGCGTGATCTTC
LOC_Os12g04920
Os.37680.1.S1_at--49--10031NONE
TAGACACCGTGCCTCTGGCTGGTCT
NONE
Os.37680.1.S1_at--949--9451Chr12:2119374..2119395 (22 bp)
TCTGGCTGGTCTGAATTCTAGTCTC
NONE
Os.37680.1.S1_at--486--3151Chr12:2119384..2119408 (25 bp)
AATTCTAGTCTCATGGATGGCGATC
NONE
Os.37680.1.S1_at--340--6411Chr12:2119405..2119429 (25 bp)
GATCTGTTGATTATATATGCCCATT
NONE
Os.37680.1.S1_at--153--10631Chr12:2119481..2119505 (25 bp)
TTCGTTGTGCCTATGACTGTTAACT
NONE
Os.37680.1.S1_at--237--7291Chr12:2119487..2119511 (25 bp)
GTGCCTATGACTGTTAACTTCGAAT
NONE
Os.37680.1.S1_at--1014--3851Chr12:2119497..2119521 (25 bp)
CTGTTAACTTCGAATATGTCGTTGT
NONE
Os.37680.1.S1_at--295--6271Chr12:2119539..2119563 (25 bp)
GATGTGTTGTATTTGAGGTTCTGCT
NONE
Os.37680.1.S1_at--220--6891Chr12:2119547..2119571 (25 bp)
GTATTTGAGGTTCTGCTACTCTCAT
NONE
Target Sequence 
AAGTCTCGCCGTGGCCAGGACTGAGCTAGGGTTTGCGTGATCTTCGGGAGGAGGGAGCAGGAGAGAGTTCGAGGAGGAGG
AGGAGGAGGAGAAGATGATCGAGGTGGTGCTGAACGACCGGCTGGGGAAGAAGGTGCGGGTGAAGTGCAACGAGGACGAC
ACCATCGGCGACCTCAAGAAGCTGGTGGCGGCGCAGACCGGGACGAGGCCCGAGAAGATCCGCATCCAGAAGTGGTACAA
CATCTACAAGGACCACATCACCCTCAGGGACTACGAGATCCACGACGGGATGGGCCTCGAGCTCTACTACAACTAGACAC
CGTGCCTCTGGCTGGTCTGAATTCTAGTCTCATGGATGGCGATCTGTTGATTATATATGCCCATTTGAGCGGCCAGCGTC
CGTAGCTCATATATAAAACTCTAGTGAGCTGTGTAGTTCGTTGTGCCTATGACTGTTAACTTCGAATATGTCGTTGTAGT
ATGATCAACCAGCAGATGTGTTGTATTTGAGGTTCTGCTACTCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis