Browse Element(s) Details


OsAffx.19534.1.S1_at

Description tigr:9640.m00686
TID=OsAffx.19534.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0757011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07540Os.21075.1.S1_at10/1112+3752602..3757543Growth regulator protein, putative, expressed
LOC_Os12g07550Os.51529.1.S1_at11/1112+3760728..3761416expressed protein
LOC_Os12g07560NANA12+3776544..3777080hypothetical protein
LOC_Os12g07570OsAffx.19534.1.S1_at11/1112+3780628..3780907hypothetical protein
LOC_Os12g07580OsAffx.7517.1.S1_x_at11/1112+3788885..3789726Dirigent-like protein, expressed
LOC_Os12g07590Os.22971.1.S1_at11/1112+3791160..3796467Protein-tyrosine phosphatase containing protein, expressed
LOC_Os12g07590Os.55631.1.S1_at11/1112+3791160..3796467Protein-tyrosine phosphatase containing protein, expressed
LOC_Os12g07590Os.22971.2.S1_x_at11/1112+3791160..3796467Protein-tyrosine phosphatase containing protein, expressed
LOC_Os12g07600NANA12+3797756..3798058hypothetical protein
LOC_Os12g07610OsAffx.19535.1.S1_at11/1112+3799030..3800862myb family transcription factor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19534.1.S1_at--674--3671Chr12:3780659..3780683 (25 bp)
TTTTTCGACAGATCCGGTTCCTTCT
LOC_Os12g07570
OsAffx.19534.1.S1_at--459--1291Chr12:3780668..3780692 (25 bp)
AGATCCGGTTCCTTCTCGTCCATGG
LOC_Os12g07570
OsAffx.19534.1.S1_at--713--9231Chr12:3780686..3780710 (25 bp)
TCCATGGCGCCTACGAGGCCGCTGA
LOC_Os12g07570
OsAffx.19534.1.S1_at--514--5811Chr12:3780724..3780748 (25 bp)
GACGCCTATGAAGTCGGCAAGGAGC
LOC_Os12g07570
OsAffx.19534.1.S1_at--206--1531Chr12:3780746..3780770 (25 bp)
AGCAGATTGGGCTCATTGACAGGAT
LOC_Os12g07570
OsAffx.19534.1.S1_at--725--8311Chr12:3780755..3780779 (25 bp)
GGCTCATTGACAGGATGGGAAAAAT
LOC_Os12g07570
OsAffx.19534.1.S1_at--1095--9351Chr12:3780779..3780803 (25 bp)
TCTGCTTAGGGAGATTAGGCTTGCC
LOC_Os12g07570
OsAffx.19534.1.S1_at--717--6051Chr12:3780789..3780813 (25 bp)
GAGATTAGGCTTGCCGATGGCTTCA
LOC_Os12g07570
OsAffx.19534.1.S1_at--747--10691Chr12:3780799..3780823 (25 bp)
TTGCCGATGGCTTCATGCTCACGAG
LOC_Os12g07570
OsAffx.19534.1.S1_at--427--10531Chr12:3780810..3780868 (25 bp)
TTCATGCTCACGAGGCGGCCAAAAA
LOC_Os12g07570
OsAffx.19534.1.S1_at--651--1871Chr12:3780856..3780877 (22 bp)
ACGAGGCGGCCAAAAAGCATTTTCA
LOC_Os12g07570
Target Sequence 
TTTTTCGACAGATCCGGTTCCTTCTCGTCCATGGCGCCTACGAGGCCGCTGAGGAGCAGCTCGGCGACGCCTATGAAGTC
GGCAAGGAGCAGATTGGGCTCATTGACAGGATGGGAAAAATCTGCTTAGGGAGATTAGGCTTGCCGATGGCTTCATGCTC
ACGAGGCGGCCAAAAAGCATTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19534.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis