Browse Element(s) Details


Os.21075.1.S1_at

Description gb:AK110878.1
DB_XREF= gi:32996087
TID=Os.21075.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.21075 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-G05, full insert sequence.
FL= gb:AK110878.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0754010/11Growth regulator protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07510OsAffx.31634.1.S1_at11/1112+3726841..3730984hypothetical protein
LOC_Os12g07510Os.51788.2.S1_at1/1112+3726841..3730984hypothetical protein
LOC_Os12g07520OsAffx.7516.1.S1_at11/1112+3738507..3741724Ribosome inactivating protein
LOC_Os12g07530Os.17850.1.S1_at11/1112+3742733..3748394expressed protein
LOC_Os12g07540Os.21075.1.S1_at10/1112+3752602..3757543Growth regulator protein, putative, expressed
LOC_Os12g07550Os.51529.1.S1_at11/1112+3760728..3761416expressed protein
LOC_Os12g07560NANA12+3776544..3777080hypothetical protein
LOC_Os12g07570OsAffx.19534.1.S1_at11/1112+3780628..3780907hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21075.1.S1_at--836--1251Chr12:3756534..3756558 (25 bp)
AGATTACTCGGTCTGTCTTCCGAGT
LOC_Os12g07540
Os.21075.1.S1_at--1067--5591Chr12:3756570..3756594 (25 bp)
GACAACTCAAGGTGGGAACTTCCCT
LOC_Os12g07540
Os.21075.1.S1_at--958--8151Chr12:3756584..3756608 (25 bp)
GGAACTTCCCTCACTTTCTGATGGG
LOC_Os12g07540
Os.21075.1.S1_at--867--3451Chr12:3756612..3756636 (25 bp)
CAGGCGCTACCTGTTTGGCGGGAAT
LOC_Os12g07540
Os.21075.1.S1_at--456--7891Chr12:3757117..3757141 (25 bp)
GGTTCAAGCGCCACATGCAGGATAT
LOC_Os12g07540
Os.21075.1.S1_at--836--2991Chr12:3757185..3757209 (25 bp)
AATGATTCCATATACACCTTCCCAA
LOC_Os12g07540
Os.21075.1.S1_at--337--2151Chr12:3757198..3757222 (25 bp)
ACACCTTCCCAATGCCTGAATGTAT
LOC_Os12g07540
Os.21075.1.S1_at--1088--2991Chr12:3757310..3757334 (25 bp)
AATGATCTGTAGGTAGCCACCACCA
LOC_Os12g07540
Os.21075.1.S1_at--417--1711Chr12:3757328..3757352 (25 bp)
ACCACCACCGTACAGAAGCAATCTT
LOC_Os12g07540
Os.21075.1.S1_at--578--53711Chr12:3757342..3757366 (25 bp)
GAAGCAATCTTTGGCCGGGAATTTG
LOC_Os12g07540
Os.21075.1.S1_at--658--3371NONE
CAGCCTTCCCTGTAAATGTATATGC
NONE
Target Sequence 
AGATTACTCGGTCTGTCTTCCGAGTGANGTCTTTGTGACAACTCAAGGTGGGAACTTCCCTCACTTTCTGATGGGGCACA
GGCGCTACCTGTTTGGCGGGAATGCAANGACAATAAAGCCAGACAAACGGAAGCTGGTNTTATCTTTCGATGATCCGAAT
ATCAGATGGAATCGGTTCAAGCGCCACATGCAGGATATACTACACCATAGTGACATGAGGGGNACTGCATTGAGGAAACC
CAATGATTCCATATACACCTTCCCAATGCCTGAATGTATGTGCCAGCAAGATGGGATGATGTAGGCCTTGTATGATTCAN
NCACATACGNCGANGAGGAGGAAANATGCAATTTTGTACACTCTGTAATGATCTGTAGGTAGCCACCACCACCGTACAGA
AGCAATCTTTGGCCGGGAATTTGTTGATTTCTGTCTGTAGATTGTAGAGAGAGGAGAGGTGAAAATTGGTTCTGGTTGTA
GATATGATGAAACACATGCTGTTGACAAGGGACAGCCTTCCCTGTAAATGTATATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis