Browse Element(s) Details


OsAffx.7516.1.S1_at

Description tigr:9640.m00681
TID=OsAffx.7516.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0752011/11Ribosome inactivating protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07490OsAffx.7515.1.S1_s_at11/1112+3717759..3719242Sec61beta family protein, expressed
LOC_Os12g07500Os.50888.1.S1_at11/1112+3722654..3725841expressed protein
LOC_Os12g07510OsAffx.31634.1.S1_at11/1112+3726841..3730984hypothetical protein
LOC_Os12g07510Os.51788.2.S1_at1/1112+3726841..3730984hypothetical protein
LOC_Os12g07520OsAffx.7516.1.S1_at11/1112+3738507..3741724Ribosome inactivating protein
LOC_Os12g07530Os.17850.1.S1_at11/1112+3742733..3748394expressed protein
LOC_Os12g07540Os.21075.1.S1_at10/1112+3752602..3757543Growth regulator protein, putative, expressed
LOC_Os12g07550Os.51529.1.S1_at11/1112+3760728..3761416expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7516.1.S1_at--67--311Chr12:3739530..3739554 (25 bp)
ATACCAATCCAATTAAGCTCCTCGT
LOC_Os12g07520
OsAffx.7516.1.S1_at--706--8051Chr12:3739689..3739713 (25 bp)
GGAGACAGAGTTTACGCCACTCTTA
LOC_Os12g07520
OsAffx.7516.1.S1_at--102--3331Chr12:3739706..3739730 (25 bp)
CACTCTTACTTTGTGCTGCTCAATT
LOC_Os12g07520
OsAffx.7516.1.S1_at--278--6451Chr12:3739795..3739819 (25 bp)
GATAATCCTTTTCTGTGAGGCGGCA
LOC_Os12g07520
OsAffx.7516.1.S1_at--34--8051Chr12:3739837..3739861 (25 bp)
GGAGTTCATTTCTGAGGCCATGTCA
LOC_Os12g07520
OsAffx.7516.1.S1_at--211--1871Chr12:3739884..3739908 (25 bp)
ACGAGACACTCTGGACATGGATCAA
LOC_Os12g07520
OsAffx.7516.1.S1_at--202--8571Chr12:3739901..3739925 (25 bp)
TGGATCAAGAACTGGTCCACCCTGT
LOC_Os12g07520
OsAffx.7516.1.S1_at--271--6851Chr12:3739929..3739953 (25 bp)
GTTTCGCACTCCACTGCAGAAGATG
LOC_Os12g07520
OsAffx.7516.1.S1_at--1115--8911Chr12:3739954..3739978 (25 bp)
TGAGCGTGATGCTACTCCACTTGAC
LOC_Os12g07520
OsAffx.7516.1.S1_at--813--3571Chr12:3740494..3740518 (25 bp)
CATAGTATGTGTTTGCTGCGGCTTA
LOC_Os12g07520
OsAffx.7516.1.S1_at--518--3791Chr12:3740509..3740533 (25 bp)
CTGCGGCTTAACGTGGAATACTTTT
LOC_Os12g07520
Target Sequence 
ATACCAATCCAATTAAGCTCCTCGTATATGAATTTGATTAAGGATAATGAAAGGCCTTACTTTTCAGTGGGGAGACAGAG
TTTACGCCACTCTTACTTTGTGCTGCTCAATTATGATGCGGAGGTGGACTTGAGGAGTGCAATGATGAAGAGACAAAGGA
AGGCGTTGACACAGTTGATAATCCTTTTCTGTGAGGCGGCACGGATAAGGCCAGTTCTGGAGTTCATTTCTGAGGCCATG
TCAACCGAGGACACCACACCACTGGACGAGACACTCTGGACATGGATCAAGAACTGGTCCACCCTGTCCCGTTTCGCACT
CCACTGCAGAAGATGTGAGCGTGATGCTACTCCACTTGACCCCAACGAAATCAAGCACGTCTCCCCCTACGGCATCACCA
GCAGGGAGCAAGTTCTGGAGGTTGTTGCAAGAGGGATTTTGTTCATAGTATGTGTTTGCTGCGGCTTAACGTGGAATACT
TTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis