Browse Element(s) Details


Os.17850.1.S1_at

Description gb:AK121492.1
DB_XREF= gi:37991115
TID=Os.17850.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17850 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033000E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033000E11, full insert sequence.
FL= gb:AK121492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0753011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07490OsAffx.7515.1.S1_s_at11/1112+3717759..3719242Sec61beta family protein, expressed
LOC_Os12g07500Os.50888.1.S1_at11/1112+3722654..3725841expressed protein
LOC_Os12g07510OsAffx.31634.1.S1_at11/1112+3726841..3730984hypothetical protein
LOC_Os12g07510Os.51788.2.S1_at1/1112+3726841..3730984hypothetical protein
LOC_Os12g07520OsAffx.7516.1.S1_at11/1112+3738507..3741724Ribosome inactivating protein
LOC_Os12g07530Os.17850.1.S1_at11/1112+3742733..3748394expressed protein
LOC_Os12g07540Os.21075.1.S1_at10/1112+3752602..3757543Growth regulator protein, putative, expressed
LOC_Os12g07550Os.51529.1.S1_at11/1112+3760728..3761416expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0016607cellular_componentnuclear speck
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17850.1.S1_at--261--2931Chr12:3747429..3747453 (25 bp)
AAGGCTACCGATGCAAAGATTGTGT
LOC_Os12g07530
Os.17850.1.S1_at--786--4651Chr12:3747924..3747948 (25 bp)
GCGTGTTCCTAGTGAAGTTTCTTCC
LOC_Os12g07530
Os.17850.1.S1_at--974--6211Chr12:3747968..3747992 (25 bp)
GAGGCGATGAGAATCCACGAGCATT
LOC_Os12g07530
Os.17850.1.S1_at--807--1991Chr12:3748072..3748096 (25 bp)
ACTCGAGGAGTTGCTATATGCGCAT
LOC_Os12g07530
Os.17850.1.S1_at--884--251Chr12:3748087..3748111 (25 bp)
ATATGCGCATATTGCAGTCGCCGAA
LOC_Os12g07530
Os.17850.1.S1_at--22--2771Chr12:3748110..3748134 (25 bp)
AAGACTTGGGCTACCTGGATGAGGA
LOC_Os12g07530
Os.17850.1.S1_at--1097--6331Chr12:3748187..3748211 (25 bp)
GATGCTACACTGAACTTGGATTCGT
LOC_Os12g07530
Os.17850.1.S1_at--984--431Chr12:3748232..3748256 (25 bp)
ATCTAGGCTAGGTTTACTGCGGCTA
LOC_Os12g07530
Os.17850.1.S1_at--533--6791Chr12:3748271..3748295 (25 bp)
GTTATCCTACTTTTTGCTTAAATTG
LOC_Os12g07530
Os.17850.1.S1_at--908--7531Chr12:3748313..3748337 (25 bp)
GTGGCTGCAACCTTGGAATCCATTA
LOC_Os12g07530
Os.17850.1.S1_at--1144--5231Chr12:3748328..3748352 (25 bp)
GAATCCATTATACTGCTACGGTTGA
LOC_Os12g07530
Target Sequence 
AAGGCTACCGATGCAAAGATTGTGTCGAAAGAAGAAATTGAAGGTGTGCTGACAGAAATTGGGGTTGCATGTGACAAGGC
AAAGATTAGCCATGGCAGACCANCCAATCAGAGCGTGTTCCTAGTGAAGTTTCTTCCAACGATATCTGGATTTCAGGAGG
CGATGAGAATCCACGAGCATTTCNCCGNCAAAAGCCACGGGAAGGAAGAGTTCCAGCANATCAAAGGTGGCAAAGGTAAG
AAGGATGCTCCTGTTGATGAACTCGAGGAGTTGCTATATGCGCATATTGCAGTCGCCGAAGACTTGGGCTACCTGGATGA
GGAAACAAAGAAGAGATGCCTGGTCAGGAGCAAGAATGACANTTGAGGCTAAAGCAGATGCTACACTGAACTTGGATTCG
TGAAGTAACAGCAACAAATTAATCTAGGCTAGGTTTACTGCGGCTAGTTGAACAGATCAAGTTATCCTACTTTTTGCTTA
AATTGTATNGCTGCTCGNCCACGTGGCTGCAACCTTGGAATCCATTATACTGCTACGGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis