Browse Element(s) Details


Os.51529.1.S1_at

Description gb:AK063010.1
DB_XREF= gi:32973028
TID=Os.51529.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51529 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-A04, full insert sequence.
FL= gb:AK063010.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0755011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07520OsAffx.7516.1.S1_at11/1112+3738507..3741724Ribosome inactivating protein
LOC_Os12g07530Os.17850.1.S1_at11/1112+3742733..3748394expressed protein
LOC_Os12g07540Os.21075.1.S1_at10/1112+3752602..3757543Growth regulator protein, putative, expressed
LOC_Os12g07550Os.51529.1.S1_at11/1112+3760728..3761416expressed protein
LOC_Os12g07560NANA12+3776544..3777080hypothetical protein
LOC_Os12g07570OsAffx.19534.1.S1_at11/1112+3780628..3780907hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51529.1.S1_at--1122--4471Chr12:3761253..3761277 (25 bp)
GCCTGGTCCCCGTGGTGCTGTCGCT
LOC_Os12g07550
Os.51529.1.S1_at--1007--2831Chr12:3761044..3761068 (25 bp)
AAGTATCTCGAGGATCAGATGGAGC
LOC_Os12g07550
Os.51529.1.S1_at--652--6351Chr12:3760999..3761023 (25 bp)
GATCCACCACCGGTAGAATCGTAGC
LOC_Os12g07550
Os.51529.1.S1_at--220--4351Chr12:3760993..3761017 (25 bp)
CCACCGGTAGAATCGTAGCCAGAAA
LOC_Os12g07550
Os.51529.1.S1_at--977--10351Chr12:3760929..3760953 (25 bp)
TTTTTGGGAAATCTGTAGCTTGTAA
LOC_Os12g07550
Os.51529.1.S1_at--652--8831Chr12:3760900..3760924 (25 bp)
TGATAGGAAGAGATCTGAGCTTGCA
LOC_Os12g07550
Os.51529.1.S1_at--1069--10431Chr12:3760834..3760858 (25 bp)
TTAGGAGTCCAATTCGAGCAAATTT
LOC_Os12g07550
Os.51529.1.S1_at--561--4731Chr12:3760805..3760829 (25 bp)
GCTGATTTGCGGTTTCTTGCTCTTG
LOC_Os12g07550
Os.51529.1.S1_at--636--3171Chr12:3760763..3760787 (25 bp)
AATTGTACATGAAACTGAACTGCTT
LOC_Os12g07550
Os.51529.1.S1_at--31--5551Chr12:3760753..3760777 (25 bp)
GAAACTGAACTGCTTGTATGATGAG
LOC_Os12g07550
Os.51529.1.S1_at--953--6911Chr12:3760738..3760762 (25 bp)
GTATGATGAGTGATTGTAGCAGATT
LOC_Os12g07550
Target Sequence 
GCCTGGTCCCCGTGGTGCTGTCGCTGGCGGTGCTCTGGCTGCCGCTGCTCTGCTGCGCGGTGGCCGTCTTCAGGTTCCGG
CGGGTGAGGATGATGAGGTCGTCGGCGGCGACGGGTGGTCGCCGCCGGTGCGGCGGAGGGGGAGGAGGACGGTGGCCGGA
GAAGGGGGAGGGGGAGGATTCCGGCGGCGATCGGGGGATGCTGCTGCAGAAGTATCTCGAGGATCAGATGGAGCTCGTCG
GAGAGTTCGCCGCCGATCCACCACCGGTAGAATCGTAGCCAGAAAGGGAAAAAAAATCTCTCTCTTTTTCTTTTTTTGGG
GTTCTTTTTGGGAAATCTGTAGCTTGTAAATGGTGATAGGAAGAGATCTGAGCTTGCAGGAACATGAGAAATTAATTTAA
AAAGCAATTAAATTAGAAATTAGGAGTCCAATTCGAGCAAATTTTGTTGCTGATTTGCGGTTTCTTGCTCTTGTTGATTT
GTAATTAATTAATTGTACATGAAACTGAACTGCTTGTATGATGAGTGATTGTAGCAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51529.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis