Browse Element(s) Details


Os.50888.1.S1_at

Description gb:AK059260.1
DB_XREF= gi:32969278
TID=Os.50888.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50888 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-025-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-A07, full insert sequence.
FL= gb:AK059260.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0750011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07470OsAffx.7514.1.S1_at9/1112+3695019..3698086hypothetical protein
LOC_Os12g07480OsAffx.31633.1.S1_s_at11/1112+3708751..3710537TCP family transcription factor containing protein, expressed
LOC_Os12g07490OsAffx.7515.1.S1_s_at11/1112+3717759..3719242Sec61beta family protein, expressed
LOC_Os12g07500Os.50888.1.S1_at11/1112+3722654..3725841expressed protein
LOC_Os12g07510OsAffx.31634.1.S1_at11/1112+3726841..3730984hypothetical protein
LOC_Os12g07510Os.51788.2.S1_at1/1112+3726841..3730984hypothetical protein
LOC_Os12g07520OsAffx.7516.1.S1_at11/1112+3738507..3741724Ribosome inactivating protein
LOC_Os12g07530Os.17850.1.S1_at11/1112+3742733..3748394expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50888.1.S1_at--623--9211Chr12:3723258..3723282 (25 bp)
TCCACAATGGAGTTCGTCTTCGCAC
LOC_Os12g07500
Os.50888.1.S1_at--622--1731Chr12:3723210..3723234 (25 bp)
ACCATCGCAGTTCGTGTCATCGAAG
LOC_Os12g07500
Os.50888.1.S1_at--1110--9351Chr12:3723191..3723215 (25 bp)
TCGAAGGCTCAACCGATTTCAGGGC
LOC_Os12g07500
Os.50888.1.S1_at--763--5671Chr12:3722955..3722979 (25 bp)
GACATCAGGCCTAGGCATGCGTTGA
LOC_Os12g07500
Os.50888.1.S1_at--864--3611Chr12:3722910..3722934 (25 bp)
CTTGGGTTCTGCAGGATGTCGGTCA
LOC_Os12g07500
Os.50888.1.S1_at--956--751Chr12:3722895..3722919 (25 bp)
ATGTCGGTCATGATCGCCTGGTCAG
LOC_Os12g07500
Os.50888.1.S1_at--1092--7111Chr12:3722875..3722899 (25 bp)
GTCAGTGCTACCTTAATTCATGTCT
LOC_Os12g07500
Os.50888.1.S1_at--959--3011Chr12:3722839..3722863 (25 bp)
AATGCTTGACTAATCCATGGCTAAC
LOC_Os12g07500
Os.50888.1.S1_at--565--851Chr12:3722823..3722847 (25 bp)
ATGGCTAACTACTACCTTTATGAGG
LOC_Os12g07500
Os.50888.1.S1_at--896--811Chr12:3722716..3722740 (25 bp)
ATGGTGCCGATGGTTTCTTTTGTAC
LOC_Os12g07500
Os.50888.1.S1_at--879--3611Chr12:3722692..3722716 (25 bp)
CTTGTGAAGTTGTGACCAGCCGGTT
LOC_Os12g07500
Target Sequence 
TCCACAATGGAGTTCGTCTTCGCACACCTGATATTCGCCGTGGAGGCCACCATCGCAGTTCGTGTCATCGAAGGCTCAAC
CGATTTCAGGGCCCGTCTCACCGCTCGCACCGCTGGCATCGATGAAGACGTGGTGCTGCTCGACTCCGGTGACGGCAAGG
TGGCGGTGGTCAATGACGATGACGACAGTGGCCCACTCGTCGTGCTGCAGCGGCGCGTCGTGGTGGTGGAGGAGAAGGGA
AGCCTGATCCTTGGTGTGGAGGCTGCAGAGATTGGCAGCGAAGAGATTGTGACGAGACAGGTGGACATCAGGCCTAGGCA
TGCGTTGAGAAGCAGGTGTGGATTCAATCTTGGGTTCTGCAGGATGTCGGTCATGATCGCCTGGTCAGTGCTACCTTAAT
TCATGTCTCATGTGCATTCAATGCTTGACTAATCCATGGCTAACTACTACCTTTATGAGGATGACACTTAGTACTAATTT
TAAGCCTCTGTCAAATTGCAAGTACTGCTTTGAACTAATTAAGCTAGATGTGATGTGATGTGATGGTGCCGATGGTTTCT
TTTGTACTTGTGAAGTTGTGACCAGCCGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis