Browse Element(s) Details


OsAffx.31633.1.S1_s_at

Description tigr:9640.m00677
TID=OsAffx.31633.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=TCP family transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0748011/11TCP family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07470OsAffx.7514.1.S1_at9/1112+3695019..3698086hypothetical protein
LOC_Os12g07480OsAffx.31633.1.S1_s_at11/1112+3708751..3710537TCP family transcription factor containing protein, expressed
LOC_Os12g07490OsAffx.7515.1.S1_s_at11/1112+3717759..3719242Sec61beta family protein, expressed
LOC_Os12g07500Os.50888.1.S1_at11/1112+3722654..3725841expressed protein
LOC_Os12g07510OsAffx.31634.1.S1_at11/1112+3726841..3730984hypothetical protein
LOC_Os12g07510Os.51788.2.S1_at1/1112+3726841..3730984hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31633.1.S1_s_at--521--5211Chr12:3710032..3710056 (25 bp)
GAATTCGCCATGATCGTCCATTCAT
LOC_Os12g07480
OsAffx.31633.1.S1_s_at--276--8851Chr12:3710042..3710066 (25 bp)
TGATCGTCCATTCATATCTTGGTAA
LOC_Os12g07480
OsAffx.31633.1.S1_s_at--525--431Chr12:3710057..3710081 (25 bp)
ATCTTGGTAATGGTGCTAGTGGTTT
LOC_Os12g07480
OsAffx.31633.1.S1_s_at--524--1451Chr12:3710082..3710106 (25 bp)
AGAAGCAAGCATCACCTTAGGGTTT
LOC_Os12g07480
OsAffx.31633.1.S1_s_at--77--7691Chr12:3710101..3710125 (25 bp)
GGGTTTAGAACTTCTTTTGCTGCCA
LOC_Os12g07480
OsAffx.31633.1.S1_s_at--1011--2011Chr12:3710166..3710190 (25 bp)
ACTACACTAGTGTCAATTTGTGCAA
LOC_Os12g07480
OsAffx.31633.1.S1_s_at--488--5951Chr12:3710255..3710279 (25 bp)
GAGCAACACTTCTTGCTAGTTCAAT
LOC_Os12g07480
OsAffx.31633.1.S1_s_at--266--4871Chr12:3710269..3710293 (25 bp)
GCTAGTTCAATTAGCCTTGTTAATT
LOC_Os12g07480
OsAffx.31633.1.S1_s_at--124--5431Chr12:3710368..3710392 (25 bp)
GAACCATTTGTCTTGTTGAGACGGG
LOC_Os12g07480
OsAffx.31633.1.S1_s_at--82--7952Chr12:3710464..3710488 (25 bp)
GGATTTGTACAGTTGATCATCTTGA
LOC_Os12g07480
OsAffx.31633.1.S1_s_at--159--431Chr12:3710479..3710503 (25 bp)
ATCATCTTGATTTATGCTGTTGCAC
LOC_Os12g07480
Target Sequence 
GAATTCGCCATGATCGTCCATTCATATCTTGGTAATGGTGCTAGTGGTTTAGAAGCAAGCATCACCTTAGGGTTTAGAAC
TTCTTTTGCTGCCATTGGATTGGGCAAAGGAGGAATCAATCAAGAAAATGGATCACTACACTAGTGTCAATTTGTGCAAG
AAGCAGAGCAAGACAAAGCTTATGTTGAGCAAAGCCAAGAGAAGCCAATGCAATGCAATGCAAGAGCAACACTTCTTGCT
AGTTCAATTAGCCTTGTTAATTAAATTTTTTTGGGGGTATTGTTTTTATTTTTGTATTGTTTGTTTTTTTTTTTGGATTG
ATCTATCAAGATTCAAGAACCATTTGTCTTGTTGAGACGGGTGTTTGATGATGATTAGTAGTGGGTCCAAATTAGGAGGG
CCAAGAAAAAAGGAGTTTGAGAGAGAAGGGGAGGATTTGTACAGTTGATCATCTTGATTTATGCTGTTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31633.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis