Browse Element(s) Details


OsAffx.19685.1.S1_at

Description tigr:9640.m01490
TID=OsAffx.19685.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1533011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15290NANA12+8716403..8720024retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15300NANA12+8721043..8721468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15314Os.52637.1.S1_x_at11/1112+8723474..8735356Staphylococcal nuclease homologue family protein, expressed
LOC_Os12g15330OsAffx.19685.1.S1_at11/1112+8739669..8740891hypothetical protein
LOC_Os12g15340Os.39778.1.A1_at9/1112+8747425..8754774retrotransposon protein, putative, LINE subclass
LOC_Os12g15340OsAffx.31760.1.S1_at1/1112+8747425..8754774retrotransposon protein, putative, LINE subclass
LOC_Os12g15350NANA12+8760825..8766771retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19685.1.S1_at--128--4331Chr12:8740207..8740231 (25 bp)
CCATTGATGAGCATGCGGTCGGACT
LOC_Os12g15330
OsAffx.19685.1.S1_at--795--6631Chr12:8740160..8740184 (25 bp)
GTTGTCCGCCATAGTATTGAGCCGA
LOC_Os12g15330
OsAffx.19685.1.S1_at--808--51Chr12:8740145..8740169 (25 bp)
ATTGAGCCGACGACAATACTCGAAA
LOC_Os12g15330
OsAffx.19685.1.S1_at--917--10131Chr12:8740113..8740137 (25 bp)
TATCGCCTTGCGTGAATCCATGGAA
LOC_Os12g15330
OsAffx.19685.1.S1_at--889--7911Chr12:8740077..8740101 (25 bp)
GGTTGATGGCACGAAGCTCACAATT
LOC_Os12g15330
OsAffx.19685.1.S1_at--157--491Chr12:8739937..8739961 (25 bp)
ATCTGTGCCCAATCGGCATGATTAG
LOC_Os12g15330
OsAffx.19685.1.S1_at--284--1912Chr12:8739892..8739916 (25 bp)
ACGTGGTCCGTCAAGGCATATTTGC
LOC_Os12g15330
OsAffx.19685.1.S1_at--379--4951Chr12:8739877..8739901 (25 bp)
GCATATTTGCCAAGAACCACGAGGA
LOC_Os12g15330
OsAffx.19685.1.S1_at--1162--3371Chr12:8739841..8739865 (25 bp)
CAGCGTGCATAGTTACCGGTGGCGA
LOC_Os12g15330
OsAffx.19685.1.S1_at--308--7991Chr12:8739801..8739825 (25 bp)
GGATGAGGGCCTTGACATTGAGCAT
LOC_Os12g15330
OsAffx.19685.1.S1_at--627--10751Chr12:8739784..8739808 (25 bp)
TTGAGCATGGCAACCGCTTGAGCGT
LOC_Os12g15330
Target Sequence 
CCATTGATGAGCATGCGGTCGGACTGCGGTTCGCCGAGGTCAGCGAGGTTGTCCGCCATAGTATTGAGCCGACGACAATA
CTCGAAAATGGAGATATCGCCTTGCGTGAATCCATGGAACTCGGTGGAGAGGTTGATGGCACGAAGCTCACAATTTTCAA
GAATTTGGAACTCCAAATCATGCCAAATGGAGCGGGTGGTGGCAGTGGGCGACATCACCTCCTGAAGCAGGTCGTGGGAG
ATGGTGCGCCAGCCGAGGACGACACAGTCCATCTGTGCCCAATCGGCATGATTAGGAAGAGGAGCGTCATACAAGACGTG
GTCCGTCAAGGCATATTTGCCAAGAACCACGAGGAAGAGACCGCGGCAGCGTGCATAGTTACCGGTGGCGAGGTCCAATG
TCACGGGGATGAGGGCCTTGACATTGAGCATGGCAACCGCTTGAGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis