Browse Element(s) Details


OsAffx.19794.1.S1_at

Description tigr:9640.m02297
TID=OsAffx.19794.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2413010/11hypothetical protein
LOC_Os12g263201/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24100NANA12+13704466..13708312retrotransposon protein, putative, unclassified
LOC_Os12g24110NANA12+13710442..13717175retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g24120NANA12+13720729..13723763retrotransposon protein, putative, unclassified
LOC_Os12g24130OsAffx.19794.1.S1_at10/1112+13732364..13735966hypothetical protein
LOC_Os12g24130Os.55313.1.S1_at1/1112+13732364..13735966hypothetical protein
LOC_Os12g24140OsAffx.31860.1.S1_at11/1112+13736781..13737740Protein kinase domain containing protein
LOC_Os12g24150OsAffx.7684.1.S1_at11/1112+13743785..13744213hypothetical protein
LOC_Os12g24160Os.49985.1.S1_at2/1112+13747297..13751274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g24160OsAffx.17730.1.S1_at1/1112+13747297..13751274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g24170Os.52193.1.S1_at11/1112+13758669..13761266Galactose binding lectin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19794.1.S1_at--660--191Chr12:13732685..13732709 (25 bp)
ATTTCGGTGATTTCGCGGCTAGCGG
LOC_Os12g24130
OsAffx.19794.1.S1_at--697--9934Chr12:13733344..13733363 (20 bp)
TAGCGGTTTTTCTCCACAGGTGTGG
LOC_Os12g24130
OsAffx.19794.1.S1_at--525--8671Chr12:13734512..13734536 (25 bp)
TGTGGTGTTTATATGCCTTACGGAA
LOC_Os12g24130
OsAffx.19794.1.S1_at--790--1931Chr12:13734531..13734555 (25 bp)
ACGGAAGATCGCCAAGGTTTGCTCG
LOC_Os12g24130
OsAffx.19794.1.S1_at--888--6051Chr12:13734656..13734680 (25 bp)
GAGTTGTTTTCCTATATGACGGCCG
LOC_Os12g24130
OsAffx.19794.1.S1_at--4--691Chr12:13734671..13734695 (25 bp)
ATGACGGCCGACTCATTTGCATCTT
LOC_Os12g24130
OsAffx.19794.1.S1_at--173--10271NONE
TTTGATGCACAGAAGATCCACCGCT
NONE
OsAffx.19794.1.S1_at--834--571Chr12:13735477..13735501 (25 bp)
ATCCACCGCTACATTGGAAGGGCGT
LOC_Os12g24130
OsAffx.19794.1.S1_at--508--7171Chr12:13735500..13735524 (25 bp)
GTCTGGGAAGCTGTTTGGCTACGAA
LOC_Os12g24130
OsAffx.19794.1.S1_at--1039--1111Chr12:13735877..13735901 (25 bp)
AGATTCAAATTTTTCGTGGTATACG
LOC_Os12g24130
OsAffx.19794.1.S1_at--390--7491Chr12:13735892..13735916 (25 bp)
GTGGTATACGAGCACTACATATCTA
LOC_Os12g24130
Target Sequence 
ATTTCGGTGATTTCGCGGCTAGCGGTTTTTCTCCACAGGTGTGGAGGGTTCCAACTTGGAGGAGTTTATCGAAGAAGTTA
AGGGTCACTTTGTTCTTCAATAAACAAGGTGTTGAAGCTCCTGAAATGTGTGGTGTTTATATGCCTTACGGAAGATCGCC
AAGGTTTGCTCGAAATCAAAGAAATGATGACCACTTTATAACAGAAGTATATATTGAGATCATTAATCAAATTAGCCAAG
AGCTTGACAATCACTTTGACGAGGTTAATATGGAGTTGTTTTCCTATATGACGGCCGACTCATTTGCATCTTTTGATGCA
CAGAAGATCCACCGCTACATTGGAAGGGCGTCTGGGAAGCTGTTTGGCTACGAATGTAGCCAAGGCGGGGTGGAGTATTT
TAGATTCAAATTTTTCGTGGTATACGAGCACTACATATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19794.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis