Browse Element(s) Details


OsAffx.19795.1.S1_s_at

Description tigr:9640.m02309
TID=OsAffx.19795.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2424010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24200OsAffx.20387.1.S1_x_at1/1112+13788660..13791841retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24210OsAffx.31069.5.S1_at5/1112+13792394..13796212retrotransposon protein, putative, unclassified
LOC_Os12g24210OsAffx.31069.5.S1_x_at3/1112+13792394..13796212retrotransposon protein, putative, unclassified
LOC_Os12g24220OsAffx.22355.1.S1_at1/1112+13799544..13804626retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g24230OsAffx.31861.1.S1_at10/1112+13805157..13808061hypothetical protein
LOC_Os12g24230Os.9598.1.S1_at3/1112+13805157..13808061hypothetical protein
LOC_Os12g24240OsAffx.19795.1.S1_s_at10/1112+13811848..13812773expressed protein
LOC_Os12g24250NANA12+13813043..13827057retrotransposon protein, putative, unclassified, expressed
LOC_Os12g24260NANA12+13830259..13838542transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19795.1.S1_s_at--959--1111Chr12:13811881..13811905 (25 bp)
AGTGATCTCACCCTTGAACTTAGTG
LOC_Os12g24240
OsAffx.19795.1.S1_s_at--932--2511NONE
AACTTAGTGACTTGAGCCAGGAGAT
NONE
OsAffx.19795.1.S1_s_at--549--5511Chr12:13812309..13812333 (25 bp)
GAACAAGTCGGCCAAGGTTGCTCAG
LOC_Os12g24240
OsAffx.19795.1.S1_s_at--72--3931Chr12:13812344..13812368 (25 bp)
CTGGCCTAGGGCAAATGCGTGATCT
LOC_Os12g24240
OsAffx.19795.1.S1_s_at--226--6411Chr12:13812364..13812388 (25 bp)
GATCTGGCGATGCAGCAGGCAACAT
LOC_Os12g24240
OsAffx.19795.1.S1_s_at--908--5131Chr12:13812548..13812572 (25 bp)
GCAAACTATCCCAAATTCAGCTAAG
LOC_Os12g24240
OsAffx.19795.1.S1_s_at--507--5291Chr12:13812578..13812602 (25 bp)
GAATGGTTCTTCGACCCGACAGCGG
LOC_Os12g24240
OsAffx.19795.1.S1_s_at--892--8151Chr12:13812615..13812639 (25 bp)
GGAAAGGACCATTCAACCGATAGAA
LOC_Os12g24240
OsAffx.19795.1.S1_s_at--94--5291Chr12:13812637..13812661 (25 bp)
GAATGGAACCTTGACACTCTAAAGA
LOC_Os12g24240
OsAffx.19795.1.S1_s_at--686--6891Chr12:13812663..13812687 (25 bp)
GTATGAATTTCTTTCCTCGTTGCTA
LOC_Os12g24240
OsAffx.19795.1.S1_s_at--228--4291Chr12:13812677..13812701 (25 bp)
CCTCGTTGCTACTTGCTTAAGGATT
LOC_Os12g24240
Target Sequence 
AGTGATCTCACCCTTGAACTTAGTGACTTGAGCCAGGAGATAGCAGATGGTGTGAACAAGTCGGCCAAGGTTGCTCAGGC
AGTGGAAACTGGCCTAGGGCAAATGCGTGATCTGGCGATGCAGCAGGCAACATCAATGATTGAAGAGCGAGCAAACTTGC
AAACTATCCCAAATTCAGCTAAGAAGTCGAATGGTTCTTCGACCCGACAGCGGCGACAGGAGAAAGGAAAGGACCATTCA
ACCGATAGAATGGAACCTTGACACTCTAAAGATGTATGAATTTCTTTCCTCGTTGCTACTTGCTTAAGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19795.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis