Browse Element(s) Details


OsAffx.19831.1.S1_at

Description tigr:9640.m02493
TID=OsAffx.19831.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2604011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g26010NANA12+15108914..15110887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26020OsAffx.31885.2.S1_x_at11/1112+15111850..15115162hypothetical protein
LOC_Os12g26020OsAffx.29789.3.S1_x_at1/1112+15111850..15115162hypothetical protein
LOC_Os12g26020OsAffx.29789.1.S1_x_at1/1112+15111850..15115162hypothetical protein
LOC_Os12g26030OsAffx.7704.1.S1_s_at11/1112+15118511..15121918metallopeptidase family M24 containing protein, expressed
LOC_Os12g26030OsAffx.7704.1.S1_at11/1112+15118511..15121918metallopeptidase family M24 containing protein, expressed
LOC_Os12g26040OsAffx.19831.1.S1_at11/1112+15124017..15125336expressed protein
LOC_Os12g26050OsAffx.19832.1.S1_at11/1112+15129078..15129791hypothetical protein
LOC_Os12g26060Os.48077.1.A1_at10/1112+15131743..15137678Bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed
LOC_Os12g26070Os.47463.1.S1_x_at6/1112+15138429..15143628transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g26070Os.14491.2.S1_x_at5/1112+15138429..15143628transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g26080NANA12+15146443..15151689transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19831.1.S1_at--1005--9971Chr12:15124095..15124119 (25 bp)
TACCTTCGCTACAAGAGTCGCACGT
LOC_Os12g26040
OsAffx.19831.1.S1_at--1067--1971Chr12:15124153..15124177 (25 bp)
ACTGCTTTCGTGAGCCTCTGCCAGA
LOC_Os12g26040
OsAffx.19831.1.S1_at--549--10191Chr12:15124229..15124253 (25 bp)
TATTCCGGGCTTGCCAGGGCGGCCA
LOC_Os12g26040
OsAffx.19831.1.S1_at--285--7871Chr12:15125089..15125113 (25 bp)
GGTTATCTTCTATCCCAACGCTGGA
LOC_Os12g26040
OsAffx.19831.1.S1_at--120--5671Chr12:15125112..15125136 (25 bp)
GACATGGCGTACTTGATGATCACCG
LOC_Os12g26040
OsAffx.19831.1.S1_at--898--8831Chr12:15125128..15125152 (25 bp)
TGATCACCGTCTTCAGTTCAACTAT
LOC_Os12g26040
OsAffx.19831.1.S1_at--886--2471Chr12:15125155..15125179 (25 bp)
AACACTCTTCTAAGGACGTCGGCGT
LOC_Os12g26040
OsAffx.19831.1.S1_at--810--4631Chr12:15125176..15125200 (25 bp)
GCGTTCCACCCGAATACAGAATCAG
LOC_Os12g26040
OsAffx.19831.1.S1_at--269--5371Chr12:15125200..15125224 (25 bp)
GAAGAGCTGTCAACACGTCCAAGGA
LOC_Os12g26040
OsAffx.19831.1.S1_at--1019--2311Chr12:15125225..15125249 (25 bp)
AAAGGTGTCACCTGGAGATTCAGAT
LOC_Os12g26040
OsAffx.19831.1.S1_at--856--111Chr12:15125281..15125305 (25 bp)
ATTCATCTGTCATCAGAGGGTACCC
LOC_Os12g26040
Target Sequence 
TACCTTCGCTACAAGAGTCGCACGTCCTTGCGACCTTCAGCCTTCTTTGCCACCGGCCACTGCTTTCGTGAGCCTCTGCC
AGACCGCGTCTCCAGGGTCGCGCCACCGCGAGCTCATCCTCTCCCGATTCCGGCTATTCCGGGCTTGCCAGGGCGGCCAT
TTTGGGCGCTGCCTCCCACGCCGAGGAGAAGCTCCACCGCCGCCTTCCGGGCCAGCCCCTCGGGCTCCGCTGGTAGTGAA
GCGGCTAGAGGGACGAAGGTGGTGGTGCGGGCTGCTAGGGTTTCTCCCCCGAGCCGCCCTCAACGACCACATAGGGGGTT
ATCTTCTATCCCAACGCTGGACATGGCGTACTTGATGATCACCGTCTTCAGTTCAACTATTCAACACTCTTCTAAGGACG
TCGGCGTTCCACCCGAATACAGAATCAGAAGAGCTGTCAACACGTCCAAGGAAAAGGTGTCACCTGGAGATTCAGATATT
GATACAGAATCTTCAACAAACTTACAGAATTCATCTGTCATCAGAGGGTACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis