Browse Element(s) Details


OsAffx.19906.1.S1_at

Description tigr:9640.m02962
TID=OsAffx.19906.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to DD1B protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3064011/11ZmEBE-2 protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30620OsAffx.19905.1.S1_at10/1112+18359695..18362403pentatricopeptide, putative
LOC_Os12g30630Os.47463.1.S1_x_at5/1112+18366907..18379812transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g30630Os.14491.2.S1_x_at3/1112+18366907..18379812transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g30630Os.27037.1.A1_at1/1112+18366907..18379812transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g30640OsAffx.19906.1.S1_at11/1112+18383882..18384977ZmEBE-2 protein, putative
LOC_Os12g30650NANA12+18386609..18387421hypothetical protein
LOC_Os12g30660NANA12+18388010..18388858hypothetical protein
LOC_Os12g30670Os.31497.2.S1_x_at1/1112+18392044..18394075retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g30680Os.1709.1.S1_x_at6/1112+18396150..18400172retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g30690NANA12+18400800..18404355Transposable element protein, putative, Transposase_28
LOC_Os12g30700OsAffx.22699.1.S1_x_at1/1112+18407578..18413346retrotransposon protein, putative, unclassified
LOC_Os12g30700OsAffx.16451.1.A1_x_at1/1112+18407578..18413346retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19906.1.S1_at--630--3211Chr12:18383920..18383944 (25 bp)
CAAGGACCAAGTAAGCTCAGCAGAT
LOC_Os12g30640
OsAffx.19906.1.S1_at--923--5151Chr12:18383962..18383986 (25 bp)
GCAACGCCATGATCTTACTGACGGA
LOC_Os12g30640
OsAffx.19906.1.S1_at--362--2291Chr12:18383986..18384010 (25 bp)
AAATGCTTTATTTGCCGGATGGATG
LOC_Os12g30640
OsAffx.19906.1.S1_at--251--6251Chr12:18384252..18384273 (22 bp)
GATGGTTGATAATGGTGTCTCGACA
LOC_Os12g30640
OsAffx.19906.1.S1_at--533--991Chr12:18384273..18384297 (25 bp)
AGGATGCTATAATCTGGACCGTGAT
LOC_Os12g30640
OsAffx.19906.1.S1_at--162--8111Chr12:18384288..18384312 (25 bp)
GGACCGTGATGGTTTTGTACCTGTA
LOC_Os12g30640
OsAffx.19906.1.S1_at--1001--7771Chr12:18384303..18384327 (25 bp)
TGTACCTGTAAACAATTCCCCTATA
LOC_Os12g30640
OsAffx.19906.1.S1_at--683--3151Chr12:18384316..18384340 (25 bp)
AATTCCCCTATAACTCCTGGAGATA
LOC_Os12g30640
OsAffx.19906.1.S1_at--600--4391Chr12:18384348..18384372 (25 bp)
GCCAACTAATGGCACTCTGAGTATC
LOC_Os12g30640
OsAffx.19906.1.S1_at--653--7371Chr12:18384652..18384676 (25 bp)
GTGACTGGTGGTTGTACTTTGGACA
LOC_Os12g30640
OsAffx.19906.1.S1_at--543--411Chr12:18384688..18384898 (25 bp)
ATCTTAGCCCTAAAACACGAGGCCT
LOC_Os12g30640
Target Sequence 
CAAGGACCAAGTAAGCTCAGCAGATTTAGCGGTACTAAATGAGCAACGCCATGATCTTACTGACGGAAATGCTTTATTTG
CCGGATGGATGGTTGATAATGGTGTCTCGACAGGATGCTATAATCTGGACCGTGATGGTTTTGTACCTGTAAACAATTCC
CCTATAACTCCTGGAGATATTTTAGAGCCAACTAATGGCACTCTGAGTATCACAATCAAGATATTTAAGAAAAAAGATGA
TGGTGACTGGTGGTTGTACTTTGGACATGATAATAACAATCTTAGCCCTAAAACACGAGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19906.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis