Browse Element(s) Details


OsAffx.19913.1.S1_x_at

Description tigr:9640.m03042
TID=OsAffx.19913.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to T5i8.12
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3143011/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31370Os.19630.1.S1_at11/1112+18847550..18850637DNA repair protein RAD51 homolog B, putative, expressed
LOC_Os12g31380Os.18456.2.S1_x_at11/1112+18850839..18853828Initiation factor 2 subunit family protein, expressed
LOC_Os12g31390OsAffx.7753.1.S1_at11/1112+18855176..18855801hypothetical protein
LOC_Os12g31400OsAffx.31962.1.S1_at11/1112+18863067..18863711hypothetical protein
LOC_Os12g31410OsAffx.31962.1.S1_at2/1112+18864745..18866782expressed protein
LOC_Os12g31420OsAffx.7754.1.S1_x_at9/1112+18869607..18871005hypothetical protein
LOC_Os12g31430OsAffx.19913.1.S1_at11/1112+18875110..18876100Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g31430OsAffx.19913.1.S1_x_at11/1112+18875110..18876100Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g31440Os.7896.1.S1_at11/1112+18880310..18884363expressed protein
LOC_Os12g31440Os.7896.2.S1_at10/1112+18880310..18884363expressed protein
LOC_Os12g31450Os.49573.1.S1_at11/1112+18884734..18887126plastid division regulator MinE, putative, expressed
LOC_Os12g31460OsAffx.7755.1.S1_s_at11/1112+18889665..18892094DnaJ domain containing protein, expressed
LOC_Os12g31470NANA12+18894239..18902927retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19913.1.S1_x_at--593--791Chr12:18875472..18875496 (25 bp)
ATGGGAGCTGCCTGACGCGGTGTTC
LOC_Os12g31430
OsAffx.19913.1.S1_x_at--17--6451Chr12:18875631..18875655 (25 bp)
GATCAGCAGCAAGACGGCGGAGCTC
LOC_Os12g31430
OsAffx.19913.1.S1_x_at--775--8391Chr12:18875671..18875695 (25 bp)
GGCGCCGCCAGGATGAACAGCACCG
LOC_Os12g31430
OsAffx.19913.1.S1_x_at--1111--9211Chr12:18875735..18875759 (25 bp)
TCCAGGCCCAGGTCGGCATGCTCGC
LOC_Os12g31430
OsAffx.19913.1.S1_x_at--933--3931Chr12:18875886..18875910 (25 bp)
CGGCGTCGCGGGAGCACCACCAGAT
LOC_Os12g31430
OsAffx.19913.1.S1_x_at--486--4011Chr12:18875889..18875913 (25 bp)
CGTCGCGGGAGCACCACCAGATGAT
LOC_Os12g31430
OsAffx.19913.1.S1_x_at--871--4791Chr12:18875956..18875980 (25 bp)
GCTCGCCGGAGAGGGCAGGTGCCTG
LOC_Os12g31430
OsAffx.19913.1.S1_x_at--497--8051Chr12:18875963..18875987 (25 bp)
GGAGAGGGCAGGTGCCTGGTGCCGA
LOC_Os12g31430
OsAffx.19913.1.S1_x_at--447--8391Chr12:18876040..18876064 (25 bp)
GGCGCTGAGCCGTGACGTCAACCGC
LOC_Os12g31430
OsAffx.19913.1.S1_x_at--148--8931Chr12:18876045..18876069 (25 bp)
TGAGCCGTGACGTCAACCGCTTCAA
LOC_Os12g31430
OsAffx.19913.1.S1_x_at--204--5871Chr12:18876046..18876070 (25 bp)
GAGCCGTGACGTCAACCGCTTCAAG
LOC_Os12g31430
Target Sequence 
ATGGGAGCTGCCTGACGCGGTGTTCGTGCGGGGAGCCGGAGCGGCGGAGGCGAAGAAGGGAGGCGCCGCGGCGAGCCACG
ACGACCACGACGACGGGCGCCACCACCACCACCACAACCAGGCCGTGCAGAGCGCGGCGGCGAGGGAGCGGCGGAGGCGG
ATCAGCAGCAAGACGGCGGAGCTCTCGCGCCTCATCCCCGGCGCCGCCAGGATGAACAGCACCGCCGAGATGCTCCAGGC
CGCCGCCCGCCACGTCCGGCTCCTCCAGGCCCAGGTCGGCATGCTCGCCCTCATCCACTCCTCCGGCGAGGCGAAGGCGG
CATCATCCATGGCGGCGTCGCGGGAGCACCACCAGATGATGATGATGCGCGCGCTGCTGGCGAGCGGCGGCGTGCAGGAG
CGGCTCGCCGGAGAGGGCAGGTGCCTGGTGCCGACGAGCCTCGTCCGCGCCATCGCCGACGACGACGCCATGGCCACCTC
CAACCCGGCGCTGAGCCGTGACGTCAACCGCTTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19913.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis