Browse Element(s) Details


OsAffx.19944.1.S1_at

Description tigr:9640.m03216
TID=OsAffx.19944.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3304011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33000OsAffx.20387.1.S1_x_at1/1112+19908431..19914477transposon protein, putative, unclassified
LOC_Os12g33010NANA12+19915611..19918441retrotransposon protein, putative, unclassified
LOC_Os12g33020Os.6051.1.S1_at10/1112+19919575..19924675mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os12g33030OsAffx.31998.1.S1_at11/1112+19925648..19926672hypothetical protein
LOC_Os12g33040OsAffx.19944.1.S1_at11/1112+19930334..19931884hypothetical protein
LOC_Os12g33050NANA12+19939829..19945951transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g33060Os.14491.2.S1_x_at2/1112+19948342..19958175transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g33060OsAffx.12558.1.S1_at1/1112+19948342..19958175transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19944.1.S1_at--193--10871Chr12:19930396..19930420 (25 bp)
TTGGCCATTATATTCGCAACTGCGT
LOC_Os12g33040
OsAffx.19944.1.S1_at--698--2551Chr12:19930413..19930437 (25 bp)
AACTGCGTCAAGTCAAGCGGAGCGA
LOC_Os12g33040
OsAffx.19944.1.S1_at--598--6191Chr12:19930436..19930460 (25 bp)
GAGGAATCCTATCTCACACAGACGC
LOC_Os12g33040
OsAffx.19944.1.S1_at--597--5931Chr12:19930463..19930482 (20 bp)
GAGCAAACTAACTCGCACGTCGTCA
LOC_Os12g33040
OsAffx.19944.1.S1_at--598--9551Chr12:19931458..19931584 (25 bp)
TCTTCTTCATCGTCAGGTCGTCAAG
LOC_Os12g33040
OsAffx.19944.1.S1_at--706--9391Chr12:19931577..19931597 (21 bp)
TCGTCAAGTTCATCTTTGTGGCCGT
LOC_Os12g33040
OsAffx.19944.1.S1_at--505--10831Chr12:19931617..19931637 (21 bp)
TTGTGGCCGTCAAGTGTGTCTTAGT
LOC_Os12g33040
OsAffx.19944.1.S1_at--365--2831Chr12:19931646..19931670 (25 bp)
AAGTTCGTCTTGGTGGTTCTCTGCT
LOC_Os12g33040
OsAffx.19944.1.S1_at--371--10511Chr12:19931705..19931729 (25 bp)
TTCAACTTCATTGCCAGGTTCGGTG
LOC_Os12g33040
OsAffx.19944.1.S1_at--31--7311Chr12:19931727..19931793 (25 bp)
GTGCTGGTCTTCTTGAGTTCCGAGA
LOC_Os12g33040
OsAffx.19944.1.S1_at--699--5411Chr12:19931816..19931840 (25 bp)
GAAGCGTCAGGTCCCATTGTTGGAA
LOC_Os12g33040
Target Sequence 
TTGGCCATTATATTCGCAACTGCGTCAAGTCAAGCGGAGCGAGGAATCCTATCTCACACAGACGCACGAGCAAACTAACT
CGCACGTCGTCAAGTTCGCCTTGGCGCGCGGTGCTTCTCTTCTTCATCGTCAGGTCGTCAAGTTCATCTTTGTGGCCGTC
AAGTGTGTCTTAGTGGAAGTTCAAGTTCGTCTTGGTGGTTCTCTGCTCTTTTCCGGTCATCTTGGTGTCTCGGTGCTGCC
CTTCAACTTCATTGCCAGGTTCGGTGCTGGTCTTCTTGAGTTCCGAGAGTTCTCGGTGGTCGTGTGTCGTGAAGCGTCAG
GTCCCATTGTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19944.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis