Browse Element(s) Details


Os.6051.1.S1_at

Description gb:AK101966.1
DB_XREF= gi:32987175
TID=Os.6051.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6051 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033076H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076H08, full insert sequence.
FL= gb:AK101966.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3302010/11mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32986Os.12781.1.S1_at11/1112+19893049..19899198Hsp90 protein, expressed
LOC_Os12g32986OsAffx.31997.1.S1_x_at4/1112+19893049..19899198Hsp90 protein, expressed
LOC_Os12g32992Os.10532.1.S1_s_at11/1112+19899961..19904288expressed protein
LOC_Os12g33000OsAffx.20387.1.S1_x_at1/1112+19908431..19914477transposon protein, putative, unclassified
LOC_Os12g33010NANA12+19915611..19918441retrotransposon protein, putative, unclassified
LOC_Os12g33020Os.6051.1.S1_at10/1112+19919575..19924675mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os12g33030OsAffx.31998.1.S1_at11/1112+19925648..19926672hypothetical protein
LOC_Os12g33040OsAffx.19944.1.S1_at11/1112+19930334..19931884hypothetical protein
LOC_Os12g33050NANA12+19939829..19945951transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g33060Os.14491.2.S1_x_at2/1112+19948342..19958175transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g33060OsAffx.12558.1.S1_at1/1112+19948342..19958175transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6051.1.S1_at--563--9171Chr12:19923295..19923319 (25 bp)
TGCCTGCACTTTGAGACAACTACGT
LOC_Os12g33020
Os.6051.1.S1_at--1061--8891NONE
TGAGTTTTCCAGGTGCACCACAAAC
NONE
Os.6051.1.S1_at--322--8891Chr12:19924252..19924276 (25 bp)
TGACCTTCGGAACTTTCTCATACAT
LOC_Os12g33020
Os.6051.1.S1_at--267--2411Chr12:19924293..19924317 (25 bp)
AAACAGGAACCTGCACTTGCTCGTC
LOC_Os12g33020
Os.6051.1.S1_at--503--7271Chr12:19924315..19924339 (25 bp)
GTCCATCTATCACTGGCACGAAGGA
LOC_Os12g33020
Os.6051.1.S1_at--1141--2931Chr12:19924344..19924368 (25 bp)
AAGGCTGGACACAGAGTTCTTCCTC
LOC_Os12g33020
Os.6051.1.S1_at--354--171Chr12:19924509..19924533 (25 bp)
ATTTTGTCCGTGTAAATGCCTCGTC
LOC_Os12g33020
Os.6051.1.S1_at--136--2291Chr12:19924522..19924546 (25 bp)
AAATGCCTCGTCTTGAGTTTCTCTT
LOC_Os12g33020
Os.6051.1.S1_at--644--6831Chr12:19924538..19924562 (25 bp)
GTTTCTCTTTTGTTCCACGAGTGTA
LOC_Os12g33020
Os.6051.1.S1_at--369--2491Chr12:19924620..19924644 (25 bp)
AACAGCTCTGTGAATCCTTATCGTG
LOC_Os12g33020
Os.6051.1.S1_at--159--5271Chr12:19924631..19924655 (25 bp)
GAATCCTTATCGTGCTTCAGCTAGT
LOC_Os12g33020
Target Sequence 
TGCCTGCACTTTGAGACAACTACGTGGGAAAGATGATGTTCTCAATGCTGGANTTGCAGGCTGTTGCACTGGCCTTGCCC
TGAGTTTTCCAGGTGCACCACAAACAATGATTCAGAGCTGCCTGACCTTCGGAACTTTCTCATACATCATAGAGATGCTC
AATAAACAGGAACCTGCACTTGCTCGTCCATCTATCACTGGCACGAAGGATCTCAAGGCTGGACACAGAGTTCTTCCTCC
CTTCACGCTCCCTCTTCCGCAAGAGGCAATGGAGGGTTTTTCCTCGTTTCAAAACTTTTTGTCGAAGTTCCAAGGGAAGT
GAACCAAGTGAATAACCTCAAGAGGGATGGTGGGTAGCTTCACCTCTTTCCTCCGTTGGATTTTGTCCGTGTAAATGCCT
CGTCTTGAGTTTCTCTTTTGTTCCACGAGTGTAATGTTCTAGGGAGTGACGGATTATGTGAATGTTGATGTCATTCTTAC
TCTTTTGAATAACAGCTCTGTGAATCCTTATCGTGCTTCAGCTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6051.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis