Browse Element(s) Details


Os.10532.1.S1_s_at

Description gb:AK073732.1
DB_XREF= gi:32983755
TID=Os.10532.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10532 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033060I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033060I15, full insert sequence.
FL= gb:AK073732.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3299211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32950Os.12382.1.S1_at2/1112+19876146..19877802Ribosome associated membrane protein RAMP4 containing protein, expressed
LOC_Os12g32960OsAffx.31996.1.S1_x_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32960OsAffx.31996.1.S1_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32970Os.51392.1.S1_s_at11/1112+19882280..19882921plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g32970Os.51737.1.S1_x_at2/1112+19882280..19882921plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g32980Os.21795.1.S1_s_at11/1112+19885823..19889406Potyvirus VPg interacting protein, putative, expressed
LOC_Os12g32986Os.12781.1.S1_at11/1112+19893049..19899198Hsp90 protein, expressed
LOC_Os12g32986OsAffx.31997.1.S1_x_at4/1112+19893049..19899198Hsp90 protein, expressed
LOC_Os12g32992Os.10532.1.S1_s_at11/1112+19899961..19904288expressed protein
LOC_Os12g33000OsAffx.20387.1.S1_x_at1/1112+19908431..19914477transposon protein, putative, unclassified
LOC_Os12g33010NANA12+19915611..19918441retrotransposon protein, putative, unclassified
LOC_Os12g33020Os.6051.1.S1_at10/1112+19919575..19924675mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os12g33030OsAffx.31998.1.S1_at11/1112+19925648..19926672hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10532.1.S1_s_at--592--4151Chr12:19900220..19900244 (25 bp)
CGCCTTCCAGCTCCTCTTGGTGGAG
LOC_Os12g32992
Os.10532.1.S1_s_at--991--8551Chr12:19900200..19900224 (25 bp)
TGGAGGCGGCACTGCAACCGCACAC
LOC_Os12g32992
Os.10532.1.S1_s_at--597--1971Chr12:19900190..19900214 (25 bp)
ACTGCAACCGCACACCGTTGGTGTG
LOC_Os12g32992
Os.10532.1.S1_s_at--591--2151Chr12:19900179..19900203 (25 bp)
ACACCGTTGGTGTGCTAGTTCCCAG
LOC_Os12g32992
Os.10532.1.S1_s_at--223--7751Chr12:19900171..19900195 (25 bp)
GGTGTGCTAGTTCCCAGTGATATGA
LOC_Os12g32992
Os.10532.1.S1_s_at--862--10031Chr12:19900164..19900188 (25 bp)
TAGTTCCCAGTGATATGAAAGGTCT
LOC_Os12g32992
Os.10532.1.S1_s_at--196--5051Chr12:19900126..19900150 (25 bp)
GCAGAAGTATGCTGCTCTACTATGT
LOC_Os12g32992
Os.10532.1.S1_s_at--1068--10131Chr12:19900119..19900143 (25 bp)
TATGCTGCTCTACTATGTTCAACCG
LOC_Os12g32992
Os.10532.1.S1_s_at--559--9891Chr12:19900109..19900133 (25 bp)
TACTATGTTCAACCGGTCCTCTTAT
LOC_Os12g32992
Os.10532.1.S1_s_at--600--8791Chr12:19900104..19900128 (25 bp)
TGTTCAACCGGTCCTCTTATCCTTT
LOC_Os12g32992
Os.10532.1.S1_s_at--186--10371Chr12:19900079..19900103 (25 bp)
TTTTTCTTGATCTGTTTTAATCATG
LOC_Os12g32992
Target Sequence 
CGCCTTCCAGCTCCTCTTGGTGGAGGCGGCACTGCAACCGCACACCGTTGGTGTGCTAGTTCCCAGTGATATGAAAGGTC
TTTTGCTGTGAAGAGCAGAAGTATGCTGCTCTACTATGTTCAACCGGTCCTCTTATCCTTTTTTTTCTTGATCTGTTTTA
ATCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10532.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis