Browse Element(s) Details


Os.21795.1.S1_s_at

Description gb:CB660276
DB_XREF= gi:29664001
DB_XREF=OSJNEd01N21.r
CLONE=OSJNEd01N21
TID=Os.21795.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.21795 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_199627.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3298011/11Potyvirus VPg interacting protein, putative, expressed
LOC_Os03g134601/11microtubule associated protein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32920OsAffx.19943.1.S1_at11/1112+19860887..19864734hypothetical protein
LOC_Os12g32930OsAffx.24546.1.S1_at9/1112+19865970..19867224hypothetical protein
LOC_Os12g32930Os.55390.1.S1_x_at4/1112+19865970..19867224hypothetical protein
LOC_Os12g32930OsAffx.12334.2.S1_at2/1112+19865970..19867224hypothetical protein
LOC_Os12g32940Os.27833.1.S1_at11/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940Os.46622.1.S1_x_at4/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.2.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.1.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32950Os.12382.1.S1_at2/1112+19876146..19877802Ribosome associated membrane protein RAMP4 containing protein, expressed
LOC_Os12g32960OsAffx.31996.1.S1_x_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32960OsAffx.31996.1.S1_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32970Os.51392.1.S1_s_at11/1112+19882280..19882921plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g32970Os.51737.1.S1_x_at2/1112+19882280..19882921plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g32980Os.21795.1.S1_s_at11/1112+19885823..19889406Potyvirus VPg interacting protein, putative, expressed
LOC_Os12g32986Os.12781.1.S1_at11/1112+19893049..19899198Hsp90 protein, expressed
LOC_Os12g32986OsAffx.31997.1.S1_x_at4/1112+19893049..19899198Hsp90 protein, expressed
LOC_Os12g32992Os.10532.1.S1_s_at11/1112+19899961..19904288expressed protein
LOC_Os12g33000OsAffx.20387.1.S1_x_at1/1112+19908431..19914477transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0001578biological_processmicrotubule bundle formation
GO:0007020biological_processmicrotubule nucleation
GO:0031116biological_processpositive regulation of microtubule polymerization
GO:0051322biological_processanaphase
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0009536cellular_componentplastid
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0008017molecular_functionmicrotubule binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21795.1.S1_s_at--530--1531Chr12:19886392..19886416 (25 bp)
AGCATCGCGCTTGCCAAATCTGAGA
LOC_Os12g32980
Os.21795.1.S1_s_at--109--951Chr12:19886358..19886382 (25 bp)
AGGACTACGCCAGCCTATACCTGAA
LOC_Os12g32980
Os.21795.1.S1_s_at--1013--1351Chr12:19886309..19886333 (25 bp)
AGAGAAGCAGTTCCTCTTCGAGAAA
LOC_Os12g32980
Os.21795.1.S1_s_at--279--1171Chr12:19886280..19886304 (25 bp)
AGTACCAGGAGACCCAGAGGCCCAT
LOC_Os12g32980
Os.21795.1.S1_s_at--63--1531Chr12:19886129..19886153 (25 bp)
AGCAGAGCTGCATACGATTCAGGTT
LOC_Os12g32980
Os.21795.1.S1_s_at--188--6631Chr12:19886107..19886131 (25 bp)
GTTGGTGAATCTTAGGTGTCCTTGT
LOC_Os12g32980
Os.21795.1.S1_s_at--1030--7452Chr12:19886092..19886116 (25 bp)
GTGTCCTTGTGCTGATGTACTCCTA
LOC_Os12g32980
Os.21795.1.S1_s_at--384--9252Chr07:23417016..23417176 (25 bp)
TCCTACGCTGATTTCCTTCGGTGTA
NONE
Os.21795.1.S1_s_at--617--7951Chr12:19885990..19886014 (25 bp)
GGATCCAATATATACTTAGCTTCGG
LOC_Os12g32980
Os.21795.1.S1_s_at--811--1551Chr12:19885973..19885997 (25 bp)
AGCTTCGGTGTTTGCAGTTGAGCAT
LOC_Os12g32980
Os.21795.1.S1_s_at--99--5391Chr12:19885933..19885957 (25 bp)
GAAGCACCCTGTACTCTGTAATAGC
LOC_Os12g32980
Target Sequence 
AGCATCGCGCTTGCCAAATCTGAGAGGGCCGAGCAGGACTACGCCAGCCTATACCTGAAGCGCCGCCTGGAGGAAGCTGA
AGCAGAGAAGCAGTTCCTCTTCGAGAAAATAAAGTACCAGGAGACCCAGAGGCCCATGCAGGCGAGCGGCAGCGGCGCCG
GCGATTCATCGCAGACGCCCATGCTCTCCAAGATTCACGACCTCCTCAAGAACGTCCGCAGCATACCGCCGAAGACGGAG
GGGCATCAATGAAAACAAAGAGCAGCAGAGCTGCATACGATTCAGGTTGGTGAATCTTAGGTGTCCTTGTGCTGATGTAC
TCCTACGCTGATTTCCTTCGGTGTAAATTGTTAGCAAAAGTCGTTGTAACAATATTATTGGAGCTAACGGTGTGCNATCG
TAGGATCCAATATATACTTAGCTTCGGTGTTTGCAGTTGAGCATGGATGAGAAATAGCTGAAGCACCCTGTACTCTGTAA
TAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21795.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis