Browse Element(s) Details


OsAffx.31996.1.S1_at

Description tigr:9640.m03208
TID=OsAffx.31996.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3296011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32910OsAffx.7772.1.S1_at11/1112+19856619..19857178hypothetical protein
LOC_Os12g32910OsAffx.22011.1.S1_at1/1112+19856619..19857178hypothetical protein
LOC_Os12g32920OsAffx.19943.1.S1_at11/1112+19860887..19864734hypothetical protein
LOC_Os12g32930OsAffx.24546.1.S1_at9/1112+19865970..19867224hypothetical protein
LOC_Os12g32930Os.55390.1.S1_x_at4/1112+19865970..19867224hypothetical protein
LOC_Os12g32930OsAffx.12334.2.S1_at2/1112+19865970..19867224hypothetical protein
LOC_Os12g32940Os.27833.1.S1_at11/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940Os.46622.1.S1_x_at4/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.2.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.1.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32950Os.12382.1.S1_at2/1112+19876146..19877802Ribosome associated membrane protein RAMP4 containing protein, expressed
LOC_Os12g32960OsAffx.31996.1.S1_x_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32960OsAffx.31996.1.S1_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32970Os.51392.1.S1_s_at11/1112+19882280..19882921plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g32970Os.51737.1.S1_x_at2/1112+19882280..19882921plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g32980Os.21795.1.S1_s_at11/1112+19885823..19889406Potyvirus VPg interacting protein, putative, expressed
LOC_Os12g32986Os.12781.1.S1_at11/1112+19893049..19899198Hsp90 protein, expressed
LOC_Os12g32986OsAffx.31997.1.S1_x_at4/1112+19893049..19899198Hsp90 protein, expressed
LOC_Os12g32992Os.10532.1.S1_s_at11/1112+19899961..19904288expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31996.1.S1_at--1014--7531Chr12:19879604..19879628 (25 bp)
GTGGCGAGCGCCTGTGGCTCCAACT
LOC_Os12g32960
OsAffx.31996.1.S1_at--1061--8451Chr12:19879605..19879629 (25 bp)
TGGCGAGCGCCTGTGGCTCCAACTG
LOC_Os12g32960
OsAffx.31996.1.S1_at--477--8651Chr12:19879616..19879640 (25 bp)
TGTGGCTCCAACTGCCCGCTGAGGC
LOC_Os12g32960
OsAffx.31996.1.S1_at--661--9211Chr12:19879622..19879646 (25 bp)
TCCAACTGCCCGCTGAGGCCGACGC
LOC_Os12g32960
OsAffx.31996.1.S1_at--680--3731Chr12:19879688..19879712 (25 bp)
CTAAAGCTGCGCGTGTGCGCCAATG
LOC_Os12g32960
OsAffx.31996.1.S1_at--935--9831Chr12:19879689..19879713 (25 bp)
TAAAGCTGCGCGTGTGCGCCAATGT
LOC_Os12g32960
OsAffx.31996.1.S1_at--820--2351Chr12:19879690..19879714 (25 bp)
AAAGCTGCGCGTGTGCGCCAATGTG
LOC_Os12g32960
OsAffx.31996.1.S1_at--446--711Chr12:19879895..19879919 (25 bp)
ATGATGACGTGGTATACTGACACAT
LOC_Os12g32960
OsAffx.31996.1.S1_at--220--8871Chr12:19879896..19879920 (25 bp)
TGATGACGTGGTATACTGACACATG
LOC_Os12g32960
OsAffx.31996.1.S1_at--634--6311Chr12:19879897..19879921 (25 bp)
GATGACGTGGTATACTGACACATGG
LOC_Os12g32960
OsAffx.31996.1.S1_at--315--691Chr12:19879898..19879922 (25 bp)
ATGACGTGGTATACTGACACATGGG
LOC_Os12g32960
Target Sequence 
GTGGCGAGCGCCTGTGGCTCCAACTGCCCGCTGAGGCCGACGCCGACACCCAGCACCGGGTCGTCGTCGAGCCCACGCGA
CGCGCTAAAGCTGCGCGTGTGCGCCAATGTGCTCGGCCTCTGCTGCTCCCTGCTCGACGGCCTTCTCCCACGTCGCAGCC
GCCAACCGCCGCCTCCTGCCTCGCCCCGGCGGCCTCCTCCCAGCTGCCATCCAGCTCGCCCAGAGAAAAGAAGAGTGAGA
GAGAGAGAGGAGGAGGAAGGGAGAGCCGGAGAGAAGGGGGAGAGAGAGAGGATGATGACGTGGTATACTGACACATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis