Browse Element(s) Details


OsAffx.24546.1.S1_at

Description tigr:9640.m03205
TID=OsAffx.24546.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g329309/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32880OsAffx.31995.1.S1_at11/1112+19842756..19844036hypothetical protein
LOC_Os12g32890OsAffx.19941.1.S1_at10/1112+19848235..19849516hypothetical protein
LOC_Os12g32900OsAffx.19942.1.S1_at11/1112+19851101..19852384hypothetical protein
LOC_Os12g32910OsAffx.7772.1.S1_at11/1112+19856619..19857178hypothetical protein
LOC_Os12g32910OsAffx.22011.1.S1_at1/1112+19856619..19857178hypothetical protein
LOC_Os12g32920OsAffx.19943.1.S1_at11/1112+19860887..19864734hypothetical protein
LOC_Os12g32930OsAffx.24546.1.S1_at9/1112+19865970..19867224hypothetical protein
LOC_Os12g32930Os.55390.1.S1_x_at4/1112+19865970..19867224hypothetical protein
LOC_Os12g32930OsAffx.12334.2.S1_at2/1112+19865970..19867224hypothetical protein
LOC_Os12g32940Os.27833.1.S1_at11/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940Os.46622.1.S1_x_at4/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.2.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.1.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32950Os.12382.1.S1_at2/1112+19876146..19877802Ribosome associated membrane protein RAMP4 containing protein, expressed
LOC_Os12g32960OsAffx.31996.1.S1_x_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32960OsAffx.31996.1.S1_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32970Os.51392.1.S1_s_at11/1112+19882280..19882921plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g32970Os.51737.1.S1_x_at2/1112+19882280..19882921plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g32980Os.21795.1.S1_s_at11/1112+19885823..19889406Potyvirus VPg interacting protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24546.1.S1_at--82--4251Chr12:19867091..19867115 (25 bp)
CCGGCTCCATCGAGTCGGTGTTGTT
LOC_Os12g32930
OsAffx.24546.1.S1_at--924--4771Chr12:19867088..19867112 (25 bp)
GCTCCATCGAGTCGGTGTTGTTGCT
LOC_Os12g32930
OsAffx.24546.1.S1_at--39--9431Chr12:19867077..19867101 (25 bp)
TCGGTGTTGTTGCTGCTCTACATCG
LOC_Os12g32930
OsAffx.24546.1.S1_at--853--3971Chr12:19867076..19867100 (25 bp)
CGGTGTTGTTGCTGCTCTACATCGC
LOC_Os12g32930
OsAffx.24546.1.S1_at--616--9031Chr12:19866989..19867011 (23 bp)
TGCAGCAAGATTGGCTACGCGATAC
LOC_Os12g32930
OsAffx.24546.1.S1_at--94--3231NONE
CAAGATTGGCTACGCGATACGCCTC
NONE
OsAffx.24546.1.S1_at--388--9951NONE
TACGCGATACGCCTCCTCGACAAGA
NONE
OsAffx.24546.1.S1_at--730--5411Chr12:19866300..19866324 (25 bp)
GAAGCGGTCGCTGCAAGTGATCAAG
LOC_Os12g32930
OsAffx.24546.1.S1_at--816--4671Chr12:19866297..19866321 (25 bp)
GCGGTCGCTGCAAGTGATCAAGATG
LOC_Os12g32930
OsAffx.24546.1.S1_at--545--7231Chr12:19866294..19866318 (25 bp)
GTCGCTGCAAGTGATCAAGATGCTC
LOC_Os12g32930
OsAffx.24546.1.S1_at--34--5191Chr12:19866288..19866312 (25 bp)
GCAAGTGATCAAGATGCTCGCGGAG
LOC_Os12g32930
Target Sequence 
CCGGCTCCATCGAGTCGGTGTTGTTGCTGCTCTACATCGCCGACGAGGAGTGCAACCTCCTAGGCCTACTCATCATCAAG
AAGCTGGCGCGCGACCACGACAACTGCAGCAAGATTGGCTACGCGATACGCCTCCTCGACAAGATCATTGACTTCTCCGC
CATCGGCGGCGGCGCCAGCGGCGCCGGATCAGCCGTGATCACGCCGTCGTGCGCCAAGGCCGTGAAGCGGTCGCTGCAAG
TGATCAAGATGCTCGCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24546.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis