Browse Element(s) Details


Os.27833.1.S1_at

Description gb:AK099395.1
DB_XREF= gi:32984604
TID=Os.27833.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27833 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000J11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000J11, full insert sequence.
FL= gb:AK061613.1 gb:AK099395.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3294011/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32880OsAffx.31995.1.S1_at11/1112+19842756..19844036hypothetical protein
LOC_Os12g32890OsAffx.19941.1.S1_at10/1112+19848235..19849516hypothetical protein
LOC_Os12g32900OsAffx.19942.1.S1_at11/1112+19851101..19852384hypothetical protein
LOC_Os12g32910OsAffx.7772.1.S1_at11/1112+19856619..19857178hypothetical protein
LOC_Os12g32910OsAffx.22011.1.S1_at1/1112+19856619..19857178hypothetical protein
LOC_Os12g32920OsAffx.19943.1.S1_at11/1112+19860887..19864734hypothetical protein
LOC_Os12g32930OsAffx.24546.1.S1_at9/1112+19865970..19867224hypothetical protein
LOC_Os12g32930Os.55390.1.S1_x_at4/1112+19865970..19867224hypothetical protein
LOC_Os12g32930OsAffx.12334.2.S1_at2/1112+19865970..19867224hypothetical protein
LOC_Os12g32940Os.27833.1.S1_at11/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940Os.46622.1.S1_x_at4/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.2.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.1.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32950Os.12382.1.S1_at2/1112+19876146..19877802Ribosome associated membrane protein RAMP4 containing protein, expressed
LOC_Os12g32960OsAffx.31996.1.S1_x_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32960OsAffx.31996.1.S1_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32970Os.51392.1.S1_s_at11/1112+19882280..19882921plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g32970Os.51737.1.S1_x_at2/1112+19882280..19882921plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g32980Os.21795.1.S1_s_at11/1112+19885823..19889406Potyvirus VPg interacting protein, putative, expressed
LOC_Os12g32986Os.12781.1.S1_at11/1112+19893049..19899198Hsp90 protein, expressed
LOC_Os12g32986OsAffx.31997.1.S1_x_at4/1112+19893049..19899198Hsp90 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0005354molecular_functiongalactose transporter activity
GO:0005355molecular_functionglucose transporter activity
GO:0005365molecular_functionmyo-inositol transporter activity
GO:0005403molecular_functionhydrogen:sugar symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0015148molecular_functionD-xylose transporter activity
GO:0015168molecular_functionglycerol transporter activity
GO:0015575molecular_functionmannitol transporter activity
GO:0015591molecular_functionD-ribose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27833.1.S1_at--782--10612Chr10:21665553..21665577 (25 bp)
TTCGTGTTCATCTACGCCTGCCTGC
NONE
Os.27833.1.S1_at--1117--9571Chr12:19868164..19868188 (25 bp)
TCTTCCATCAATGAATCAATTCACA
LOC_Os12g32940
Os.27833.1.S1_at--1088--3571Chr12:19868056..19868080 (25 bp)
CATTTGGCTGATTAATTGGTATACT
LOC_Os12g32940
Os.27833.1.S1_at--1020--152Chr06:20977758..20977777 (20 bp)
ATTATTACTGTTGAAATTGACATGT
NONE
Os.27833.1.S1_at--144--51Chr12:19868008..19868032 (25 bp)
ATTGACATGTAAAGATCGGTGGGAC
LOC_Os12g32940
Os.27833.1.S1_at--541--2791Chr12:19867997..19868021 (25 bp)
AAGATCGGTGGGACAGTGGATACAT
LOC_Os12g32940
Os.27833.1.S1_at--378--3031Chr12:19867879..19867903 (25 bp)
AATCCTGTAAATTTTCTTGACGAGC
LOC_Os12g32940
Os.27833.1.S1_at--848--3871Chr12:19867875..19867899 (25 bp)
CTGTAAATTTTCTTGACGAGCCTTT
LOC_Os12g32940
Os.27833.1.S1_at--893--10371Chr12:19867868..19867892 (25 bp)
TTTTCTTGACGAGCCTTTATCGGTT
LOC_Os12g32940
Os.27833.1.S1_at--616--10111Chr12:19867863..19867887 (25 bp)
TTGACGAGCCTTTATCGGTTGGTTT
LOC_Os12g32940
Os.27833.1.S1_at--760--10711Chr12:19867839..19867863 (25 bp)
TTGCTATTTATCAGGCGAGCCATAT
LOC_Os12g32940
Target Sequence 
TTCGTGTTCATCTACGCCTGCCTGCCGGAGACCAGGGGGCGGAGCCTCGAGGACATGGAGGAGCTCTTCCACACCAAGTG
ATGATCTCATCTTCCATCAATGAATCAATTCACATATATATGCATTTGGGTTGTTGCAACATTTTGAATGGAAAGTTTGA
TTCTTTCTTGGTAAGATTATCAAAGGTTTTTCATGTTCATTTGGCTGATTAATTGGTATACTATAAATTTATTATTACTG
TTGAAATTGACATGTAAAGATCGGTGGGACAGTGGATACATANNGGCTGAATATGGGGAAAAGAGAAAAGTTTAGAACGG
AGGGATTTTGTATTATAGAAAGAAAACTAAAACATGTGTGTTTAATTTTGTAAAAATCCTGTAAATTTTCTTGACGAGCC
TTTATCGGTTGGTTTTGCTATTTATCAGGCGAGCCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis