Browse Element(s) Details


Os.12781.1.S1_at

Description gb:AK069204.1
DB_XREF= gi:32979228
TID=Os.12781.1
CNT=26
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.12781 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023009C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009C12, full insert sequence.
FL= gb:AK069204.1 gb:AK067032.1 gb:AK059704.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3298611/11Hsp90 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32940Os.27833.1.S1_at11/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940Os.46622.1.S1_x_at4/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.2.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.1.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32950Os.12382.1.S1_at2/1112+19876146..19877802Ribosome associated membrane protein RAMP4 containing protein, expressed
LOC_Os12g32960OsAffx.31996.1.S1_x_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32960OsAffx.31996.1.S1_at11/1112+19879535..19880014hypothetical protein
LOC_Os12g32970Os.51392.1.S1_s_at11/1112+19882280..19882921plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g32970Os.51737.1.S1_x_at2/1112+19882280..19882921plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g32980Os.21795.1.S1_s_at11/1112+19885823..19889406Potyvirus VPg interacting protein, putative, expressed
LOC_Os12g32986Os.12781.1.S1_at11/1112+19893049..19899198Hsp90 protein, expressed
LOC_Os12g32986OsAffx.31997.1.S1_x_at4/1112+19893049..19899198Hsp90 protein, expressed
LOC_Os12g32992Os.10532.1.S1_s_at11/1112+19899961..19904288expressed protein
LOC_Os12g33000OsAffx.20387.1.S1_x_at1/1112+19908431..19914477transposon protein, putative, unclassified
LOC_Os12g33010NANA12+19915611..19918441retrotransposon protein, putative, unclassified
LOC_Os12g33020Os.6051.1.S1_at10/1112+19919575..19924675mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009704biological_processde-etiolation
GO:0010157biological_processresponse to chlorate
GO:0046685biological_processresponse to arsenic
GO:0005739cellular_componentmitochondrion
GO:0009570cellular_componentchloroplast stroma
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12781.1.S1_at--345--1251Chr12:19893389..19893413 (25 bp)
AGTTGGTGGACGATAGCCAGAAGAA
LOC_Os12g32986
Os.12781.1.S1_at--324--5351Chr12:19893370..19893394 (25 bp)
GAAGAAATAAGGGAATCGTCGAGTT
LOC_Os12g32986
Os.12781.1.S1_at--1032--7891Chr12:19893321..19893345 (25 bp)
GGTTCTTTTTCGGATCCATTTCATA
LOC_Os12g32986
Os.12781.1.S1_at--688--3571Chr12:19893305..19893329 (25 bp)
CATTTCATACGATTATGCCGTCCTC
LOC_Os12g32986
Os.12781.1.S1_at--907--10411Chr12:19893293..19893317 (25 bp)
TTATGCCGTCCTCCCAGAATATTGT
LOC_Os12g32986
Os.12781.1.S1_at--788--7251Chr12:19893286..19893310 (25 bp)
GTCCTCCCAGAATATTGTAGCTTAA
LOC_Os12g32986
Os.12781.1.S1_at--683--8751Chr12:19893271..19893295 (25 bp)
TGTAGCTTAATTTTGTTGCCGAAAC
LOC_Os12g32986
Os.12781.1.S1_at--32--10271Chr12:19893260..19893284 (25 bp)
TTTGTTGCCGAAACGCTGAGATTTT
LOC_Os12g32986
Os.12781.1.S1_at--208--3931Chr12:19893215..19893239 (25 bp)
CGGCCAGTGCAATGAGCTGTGTGTT
LOC_Os12g32986
Os.12781.1.S1_at--346--5191Chr12:19893207..19893231 (25 bp)
GCAATGAGCTGTGTGTTAAACCAAT
LOC_Os12g32986
Os.12781.1.S1_at--386--7871Chr12:19893157..19893181 (25 bp)
GGTTTCTTTGCTAGGAACAATTACT
LOC_Os12g32986
Target Sequence 
AGTTGGTGGACGATAGCCAGAAGAAATAAGGGAATCGTCGAGTTTTNCCTCAAGNTTCTATAAACCTTAGGTTCTTTTTC
GGATCCATTTCATACGATTATGCCGTCCTCCCAGAATATTGTAGCTTAATTTTGTTGCCGAAACGCTGAGATTTTTTTTT
TTTCAGTTTGGTTGNGCGGCCAGTGCAATGAGCTGTGTGTTAAACCAATAGGATTGTGTTATGTTAGGAATAATGGTTTC
TTTGCTAGGAACAATTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12781.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis