Browse Element(s) Details


OsAffx.19941.1.S1_at

Description tigr:9640.m03201
TID=OsAffx.19941.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3289010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32870OsAffx.31994.1.S1_at11/1112+19836837..19839307hypothetical protein
LOC_Os12g32880OsAffx.31995.1.S1_at11/1112+19842756..19844036hypothetical protein
LOC_Os12g32890OsAffx.19941.1.S1_at10/1112+19848235..19849516hypothetical protein
LOC_Os12g32900OsAffx.19942.1.S1_at11/1112+19851101..19852384hypothetical protein
LOC_Os12g32910OsAffx.7772.1.S1_at11/1112+19856619..19857178hypothetical protein
LOC_Os12g32910OsAffx.22011.1.S1_at1/1112+19856619..19857178hypothetical protein
LOC_Os12g32920OsAffx.19943.1.S1_at11/1112+19860887..19864734hypothetical protein
LOC_Os12g32930OsAffx.24546.1.S1_at9/1112+19865970..19867224hypothetical protein
LOC_Os12g32930Os.55390.1.S1_x_at4/1112+19865970..19867224hypothetical protein
LOC_Os12g32930OsAffx.12334.2.S1_at2/1112+19865970..19867224hypothetical protein
LOC_Os12g32940Os.27833.1.S1_at11/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940Os.46622.1.S1_x_at4/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.2.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed
LOC_Os12g32940OsAffx.11634.1.S1_x_at1/1112+19867836..19870107Sugar transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19941.1.S1_at--705--1931Chr12:19849438..19849462 (25 bp)
ACGGCGTGCCACAGCGTCGACGGCT
LOC_Os12g32890
OsAffx.19941.1.S1_at--1081--1631Chr12:19849426..19849450 (25 bp)
AGCGTCGACGGCTTGCGCAGCGCCA
LOC_Os12g32890
OsAffx.19941.1.S1_at--1096--4991Chr12:19849386..19849410 (25 bp)
GCAGGCCTAGTACGGCTCGGTGGCA
LOC_Os12g32890
OsAffx.19941.1.S1_at--959--6211Chr12:19849341..19849365 (25 bp)
GAGGCGTCAGCTGCGTCATTCGTGA
LOC_Os12g32890
OsAffx.19941.1.S1_at--567--7111Chr12:19849336..19849360 (25 bp)
GTCAGCTGCGTCATTCGTGAGCCTG
LOC_Os12g32890
OsAffx.19941.1.S1_at--105--1611Chr12:19849333..19849357 (25 bp)
AGCTGCGTCATTCGTGAGCCTGAGT
LOC_Os12g32890
OsAffx.19941.1.S1_at--432--4631Chr12:19849329..19849353 (25 bp)
GCGTCATTCGTGAGCCTGAGTTCTT
LOC_Os12g32890
OsAffx.19941.1.S1_at--1143--91Chr12:19849324..19849348 (25 bp)
ATTCGTGAGCCTGAGTTCTTGAGCA
LOC_Os12g32890
OsAffx.19941.1.S1_at--1042--3991Chr12:19849321..19849345 (25 bp)
CGTGAGCCTGAGTTCTTGAGCACCG
LOC_Os12g32890
OsAffx.19941.1.S1_at--8--5951NONE
GAGCACCGAGGTGTTGATCCGACCA
NONE
OsAffx.19941.1.S1_at--654--4231Chr12:19848713..19848734 (22 bp)
CCGAGGTGTTGATCCGACCATGTTG
LOC_Os12g32890
Target Sequence 
ACGGCGTGCCACAGCGTCGACGGCTTGCGCAGCGCCAGCCTTCTCCGCCGCGGCAGGCCTAGTACGGCTCGGTGGCAGCG
GTGCAGCGACGACGGCGGAGGCGTCAGCTGCGTCATTCGTGAGCCTGAGTTCTTGAGCACCGAGGTGTTGATCCGACCAT
GTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19941.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis