Browse Element(s) Details


OsAffx.19945.2.S1_at

Description tigr:9640.m03219
TID=OsAffx.19945.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable transcription factor (MYB46) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3307011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33050NANA12+19939829..19945951transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g33060Os.14491.2.S1_x_at2/1112+19948342..19958175transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g33060OsAffx.12558.1.S1_at1/1112+19948342..19958175transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g33070OsAffx.19945.2.S1_at11/1112+19962868..19965843Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g33080Os.11364.1.S1_at11/1112+19976847..199802972-oxoglutarate/malate translocator, chloroplast precursor, putative, expressed
LOC_Os12g33090OsAffx.31999.2.S1_at11/1112+19990275..19992189Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0010119biological_processregulation of stomatal movement
GO:0010214biological_processseed coat development
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0016566molecular_functionspecific transcriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19945.2.S1_at--223--2731Chr12:19963326..19963350 (25 bp)
AAGCAAGCATACTACGGATCAACCG
LOC_Os12g33070
OsAffx.19945.2.S1_at--808--3371Chr12:19963273..19963297 (25 bp)
CACCATGGACGGATCAAGCTTAATA
LOC_Os12g33070
OsAffx.19945.2.S1_at--1114--4891Chr12:19963256..19963280 (25 bp)
GCTTAATAGGAGATCATCACCATCA
LOC_Os12g33070
OsAffx.19945.2.S1_at--828--10231Chr12:19963215..19963239 (25 bp)
TTTGGCGGCGCATCAGTGCCACCTC
LOC_Os12g33070
OsAffx.19945.2.S1_at--488--10011Chr12:19963187..19963211 (25 bp)
TAGACCACCAAACCATTCTCGACGA
LOC_Os12g33070
OsAffx.19945.2.S1_at--1158--2151Chr12:19963116..19963140 (25 bp)
ACACTGAGCAGCAACATCACAGACA
LOC_Os12g33070
OsAffx.19945.2.S1_at--486--3411Chr12:19963045..19963069 (25 bp)
CAGCAGCTGCTGCATTAGCCTAATG
LOC_Os12g33070
OsAffx.19945.2.S1_at--535--4951Chr12:19963034..19963058 (25 bp)
GCATTAGCCTAATGAACAGCAGCAG
LOC_Os12g33070
OsAffx.19945.2.S1_at--1133--1511Chr12:19963014..19963038 (25 bp)
AGCAGCAACATGATCTATTGGGAGG
LOC_Os12g33070
OsAffx.19945.2.S1_at--666--10171Chr12:19962999..19963023 (25 bp)
TATTGGGAGGGTCACCACCAACAAC
LOC_Os12g33070
OsAffx.19945.2.S1_at--531--1511Chr12:19962941..19962965 (25 bp)
AGCAGCACATGAGCAGGAATGTCAT
LOC_Os12g33070
Target Sequence 
AAGCAAGCATACTACGGATCAACCGGCGCCCACCACCACCACCACGCGATCGCCACCATGGACGGATCAAGCTTAATAGG
AGATCATCACCATCACAGCAGCAGCATCCTCTTTGGCGGCGCATCAGTGCCACCTCTCCTAGACCACCAAACCATTCTCG
ACGACGACGACGACCACCCTAACAAAACCGGCAGCAACACGACCGCGGCCACACTGAGCAGCAACATCACAGACAACAGC
AACAGCAACAAGAACAACAGTGATAATAACAACAACATCAGCAGCAGCTGCTGCATTAGCCTAATGAACAGCAGCAGCAA
CATGATCTATTGGGAGGGTCACCACCAACAACAGCAGCAGCAGCATCAGATGCTGCAGCAGCAGCAGCAGCACATGAGCA
GGAATGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19945.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis