Browse Element(s) Details


OsAffx.20044.1.S1_at

Description tigr:9640.m03916
TID=OsAffx.20044.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=B3 DNA binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4008011/11B3 DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40040NANA12+24722526..24725257retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g40050Os.56292.1.S1_x_at2/1112+24727154..24732152retrotransposon protein, putative, unclassified
LOC_Os12g40050Os.56292.1.S1_at1/1112+24727154..24732152retrotransposon protein, putative, unclassified
LOC_Os12g40060Os.45957.4.S1_x_at1/1112+24734024..24738825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g40070OsAffx.32111.1.S1_at11/1112+24740088..24745206B3 DNA binding domain containing protein
LOC_Os12g40080OsAffx.20044.1.S1_at11/1112+24747415..24749722B3 DNA binding domain containing protein
LOC_Os12g40090NANA12+24751137..24752756B3 DNA binding domain containing protein
LOC_Os12g40100OsAffx.32113.1.S1_s_at11/1112+24759591..24764791expressed protein
LOC_Os12g40100OsAffx.32113.1.S1_at7/1112+24759591..24764791expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20044.1.S1_at--891--1951Chr12:24748812..24748836 (25 bp)
ACTGGTTGGTTGGACTTCATTCGCA
LOC_Os12g40080
OsAffx.20044.1.S1_at--672--2891Chr12:24748852..24748876 (25 bp)
AAGGTGATATCTGCGTATTCGAAGC
LOC_Os12g40080
OsAffx.20044.1.S1_at--323--10751Chr12:24748917..24748941 (25 bp)
TTGAAGCAGAGCCATCACCCAAAAC
LOC_Os12g40080
OsAffx.20044.1.S1_at--1013--971Chr12:24749051..24749075 (25 bp)
AGGATGTGTTCCTTCCACCAAGTTT
LOC_Os12g40080
OsAffx.20044.1.S1_at--629--3371Chr12:24749066..24749090 (25 bp)
CACCAAGTTTCCTAGGCATGGAGTT
LOC_Os12g40080
OsAffx.20044.1.S1_at--6--7071Chr12:24749092..24749116 (25 bp)
GTAAGCCTAACTACATTGTGTCAAG
LOC_Os12g40080
OsAffx.20044.1.S1_at--446--7451Chr12:24749109..24749133 (25 bp)
GTGTCAAGATTTACCACTCTATCTG
LOC_Os12g40080
OsAffx.20044.1.S1_at--736--3651Chr12:24749170..24749194 (25 bp)
CTATTCAATCCGAAATCCCCATTTT
LOC_Os12g40080
OsAffx.20044.1.S1_at--935--4731Chr12:24749199..24749223 (25 bp)
GCTGTCATGCGGGAAAGCTTCATTA
LOC_Os12g40080
OsAffx.20044.1.S1_at--500--3111Chr12:24749475..24749499 (25 bp)
AATATGCTGCCAAATATCTCCCACG
LOC_Os12g40080
OsAffx.20044.1.S1_at--228--10431Chr12:24749514..24749538 (25 bp)
TTATGAGGCTTCGACTGCCCAATAA
LOC_Os12g40080
Target Sequence 
ACTGGTTGGTTGGACTTCATTCGCAACAATCATTTGCAAGAAGGTGATATCTGCGTATTCGAAGCATCAAAAAACAAGAG
GGGAGTTGCATTGATATTTCATCCTTTGAAGCAGAGCCATCACCCAAAACCGCCAGGATGTGTTCCTTCCACCAAGTTTC
CTAGGCATGGAGTTAGTAAGCCTAACTACATTGTGTCAAGATTTACCACTCTATCTGGTCAGCTTAAAATAAAAGTGGAA
GCCAAAGTACAAGCTATTCAATCCGAAATCCCCATTTTTGTAGCTGTCATGCGGGAAAGCTTCATTAGAGGCAGGTCAAG
ATATATGTGCTTCAGTGCAAAATATGCTGCCAAATATCTCCCACGGGAGAAGAACAAAATTATGAGGCTTCGACTGCCCA
ATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis