Browse Element(s) Details


OsAffx.20053.1.S1_at

Description tigr:9640.m03950
TID=OsAffx.20053.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4040011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40350OsAffx.20052.1.S1_x_at11/1112+24950934..24952937F-box domain containing protein
LOC_Os12g40350OsAffx.20052.2.S1_at1/1112+24950934..24952937F-box domain containing protein
LOC_Os12g40350Os.54823.1.S1_at1/1112+24950934..24952937F-box domain containing protein
LOC_Os12g40360Os.54823.1.S1_at9/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40360OsAffx.20052.1.S1_x_at2/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40360OsAffx.20052.2.S1_at1/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40370OsAffx.32119.1.S1_at2/1112+24964605..24967298F-box domain containing protein
LOC_Os12g40380OsAffx.7843.1.S1_at11/1112+24968681..24969813hypothetical protein
LOC_Os12g40390OsAffx.32120.1.S1_at10/1112+24970908..24973526hypothetical protein
LOC_Os12g40400OsAffx.20053.1.S1_at11/1112+24974169..24974745hypothetical protein
LOC_Os12g40419OsAffx.32121.1.S1_at11/1112+24981489..24992912Protein kinase domain containing protein, expressed
LOC_Os12g40419Os.53744.2.S1_x_at10/1112+24981489..24992912Protein kinase domain containing protein, expressed
LOC_Os12g40419OsAffx.20054.1.S1_at10/1112+24981489..24992912Protein kinase domain containing protein, expressed
LOC_Os12g40440Os.37806.1.S1_at5/1112+24993751..24996177expressed protein
LOC_Os12g40450NANA12+24996604..24998662lipoate-protein ligase B containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20053.1.S1_at--674--8031Chr12:24974396..24974420 (25 bp)
GGAGTCCACCACTCGGGATGGTCAA
LOC_Os12g40400
OsAffx.20053.1.S1_at--990--4091Chr12:24974430..24974454 (25 bp)
CGACGGTGAGGCAAAGTCAGAGTCA
LOC_Os12g40400
OsAffx.20053.1.S1_at--876--9631Chr12:24974446..24974470 (25 bp)
TCAGAGTCAGGCTCGGTAGTGCCCC
LOC_Os12g40400
OsAffx.20053.1.S1_at--1130--2451Chr12:24974505..24974529 (25 bp)
AACAACTGAATGGTGGGTCCGCCTA
LOC_Os12g40400
OsAffx.20053.1.S1_at--994--7791Chr12:24974539..24974563 (25 bp)
GGTCGTGATGTTGCCGGGTCTACCT
LOC_Os12g40400
OsAffx.20053.1.S1_at--881--4291Chr12:24974565..24974589 (25 bp)
CCTAGTCGAGCTCAAGCCTTCGGAG
LOC_Os12g40400
OsAffx.20053.1.S1_at--1140--2651Chr12:24974578..24974602 (25 bp)
AAGCCTTCGGAGCTGGCATGCAGAT
LOC_Os12g40400
OsAffx.20053.1.S1_at--1162--6251Chr12:24974600..24974624 (25 bp)
GATGTGACAGCGATGGACCTCCGAA
LOC_Os12g40400
OsAffx.20053.1.S1_at--1080--831Chr12:24974612..24974636 (25 bp)
ATGGACCTCCGAAGCTCCTTGGAAT
LOC_Os12g40400
OsAffx.20053.1.S1_at--458--2691Chr12:24974623..24974647 (25 bp)
AAGCTCCTTGGAATCTATATGGCAG
LOC_Os12g40400
OsAffx.20053.1.S1_at--688--4751Chr12:24974691..24974715 (25 bp)
GCTGAGCTCCTTAGGACATCCACAA
LOC_Os12g40400
Target Sequence 
GGAGTCCACCACTCGGGATGGTCAAGGGCGATGGCGACGGTGAGGCAAAGTCAGAGTCAGGCTCGGTAGTGCCCCCACAC
AAGTCCAACAGCTTCTCATCGGTTGCAACAACAACTGAATGGTGGGTCCGCCTAGTGGCGAAGGGTCGTGATGTTGCCGG
GTCTACCTCCCTAGTCGAGCTCAAGCCTTCGGAGCTGGCATGCAGATGTGACAGCGATGGACCTCCGAAGCTCCTTGGAA
TCTATATGGCAGCAAGGCGTGGGGGCAGTGAGGACGACGTCTATCTCCCGCCACTGCTGAGCTCCTTAGGACATCCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20053.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis