Browse Element(s) Details


OsAffx.20072.1.S1_at

Description tigr:9640.m04054
TID=OsAffx.20072.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=receptor-like protein kinase homolog RK20-1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4141011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41380OsAffx.20071.1.S1_x_at11/1112+25598951..25604862Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g41380Os.53443.1.S1_at10/1112+25598951..25604862Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g41390Os.6156.1.S1_a_at11/1112+25608238..25611838Homocysteine S-methyltransferase 3, putative, expressed
LOC_Os12g41400Os.24938.1.S1_at11/1112+25613833..25618619Eukaryotic translation initiation factor 2 gamma subunit, putative, expressed
LOC_Os12g41410OsAffx.20072.1.S1_at11/1112+25622771..25624261hypothetical protein
LOC_Os12g41420OsAffx.20073.1.S1_at11/1112+25629337..25629726lectin protein kinase, putative
LOC_Os12g41420OsAffx.20077.1.S1_x_at1/1112+25629337..25629726lectin protein kinase, putative
LOC_Os12g41430OsAffx.32134.3.S1_at11/1112+25631101..25632756expressed protein
LOC_Os12g41430OsAffx.32134.1.S1_s_at11/1112+25631101..25632756expressed protein
LOC_Os12g41430Os.18757.2.S1_x_at3/1112+25631101..25632756expressed protein
LOC_Os12g41440Os.55580.1.S1_at1/1112+25635595..25639713retrotransposon protein, putative, LINE subclass
LOC_Os12g41450Os.54788.1.S1_at11/1112+25644266..25646033F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005576cellular_componentextracellular region
GO:0031225cellular_componentanchored to membrane
GO:0004672molecular_functionprotein kinase activity
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20072.1.S1_at--461--9291Chr12:25623535..25623559 (25 bp)
TCCGTCGTCCACAAGGTCAACAGGA
LOC_Os12g41410
OsAffx.20072.1.S1_at--37--2231Chr12:25623545..25623569 (25 bp)
ACAAGGTCAACAGGATTCGTCGCCG
LOC_Os12g41410
OsAffx.20072.1.S1_at--93--4511Chr12:25623587..25623611 (25 bp)
GCCGTCTCTTTCATGGTCATTCTTG
LOC_Os12g41410
OsAffx.20072.1.S1_at--1092--811Chr12:25623599..25623623 (25 bp)
ATGGTCATTCTTGGCGTCTCGATCT
LOC_Os12g41410
OsAffx.20072.1.S1_at--122--1831Chr12:25623651..25623675 (25 bp)
ACGCCCGGCTGATGAGGGAGCATCA
LOC_Os12g41410
OsAffx.20072.1.S1_at--633--8091Chr12:25623702..25623726 (25 bp)
GGACCAGACCAAAGCGATTCCGCTA
LOC_Os12g41410
OsAffx.20072.1.S1_at--752--2351Chr12:25623712..25623736 (25 bp)
AAAGCGATTCCGCTACGACGAGCTC
LOC_Os12g41410
OsAffx.20072.1.S1_at--278--4071Chr12:25623883..25623907 (25 bp)
CGAGTCAGAGGTGCGTATCATTAGT
LOC_Os12g41410
OsAffx.20072.1.S1_at--52--1051Chr12:25623891..25623915 (25 bp)
AGGTGCGTATCATTAGTCGCCTCCG
LOC_Os12g41410
OsAffx.20072.1.S1_at--219--7791Chr12:25623945..25623969 (25 bp)
GGTGCCACGACGGAAGCGAGCTCCT
LOC_Os12g41410
OsAffx.20072.1.S1_at--671--4251Chr12:25624040..25624205 (25 bp)
CCGTGGCCACTCAGCAAATATCTAT
LOC_Os12g41410
Target Sequence 
TCCGTCGTCCACAAGGTCAACAGGATTCGTCGCCGGCCTGTCTGTCGCCGGCGCCGTCTCTTTCATGGTCATTCTTGGCG
TCTCGATCTGGCTCCTCTTGCGCCGCCGCCGGAAGCACGCCCGGCTGATGAGGGAGCATCAGGAGATGGAAGATGACTTC
GAAAAGGGGACCAGACCAAAGCGATTCCGCTACGACGAGCTCTCCGTCGCCACAGACTTCTTCTCCGACGACTGCAAGCT
CGGGGAAGGCGGGTTCGGCTCGAAGCAGGGGAGGAAGGAGTACGAGTCAGAGGTGCGTATCATTAGTCGCCTCCGCCACC
GCAATCTGGTGCAGCTCATCGGCTGGTGCCACGACGGAAGCGAGCTCCTCCTCGTCTACGAGCTCATGCCCAACGCCAGC
CTCGACACCCACCTCTACAACGCCAACGCCAACGTGCTCCCGTGGCCACTCAGCAAATATCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis