Browse Element(s) Details


OsAffx.32134.1.S1_s_at

Description tigr:9640.m04058
TID=OsAffx.32134.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4143011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41390Os.6156.1.S1_a_at11/1112+25608238..25611838Homocysteine S-methyltransferase 3, putative, expressed
LOC_Os12g41400Os.24938.1.S1_at11/1112+25613833..25618619Eukaryotic translation initiation factor 2 gamma subunit, putative, expressed
LOC_Os12g41410OsAffx.20072.1.S1_at11/1112+25622771..25624261hypothetical protein
LOC_Os12g41420OsAffx.20073.1.S1_at11/1112+25629337..25629726lectin protein kinase, putative
LOC_Os12g41420OsAffx.20077.1.S1_x_at1/1112+25629337..25629726lectin protein kinase, putative
LOC_Os12g41430OsAffx.32134.3.S1_at11/1112+25631101..25632756expressed protein
LOC_Os12g41430OsAffx.32134.1.S1_s_at11/1112+25631101..25632756expressed protein
LOC_Os12g41430Os.18757.2.S1_x_at3/1112+25631101..25632756expressed protein
LOC_Os12g41440Os.55580.1.S1_at1/1112+25635595..25639713retrotransposon protein, putative, LINE subclass
LOC_Os12g41450Os.54788.1.S1_at11/1112+25644266..25646033F-box domain containing protein, expressed
LOC_Os12g41460OsAffx.32135.1.S1_at11/1112+25654058..25657610hypothetical protein
LOC_Os12g41460Os.54788.1.S1_at2/1112+25654058..25657610hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32134.1.S1_s_at--912--3631Chr12:25631540..25631564 (25 bp)
CTTGCCATAGTAAGTATTTCTCCTG
LOC_Os12g41430
OsAffx.32134.1.S1_s_at--1021--4311Chr12:25631536..25631560 (25 bp)
CCATAGTAAGTATTTCTCCTGGTTA
LOC_Os12g41430
OsAffx.32134.1.S1_s_at--22--10071Chr12:25631533..25631557 (25 bp)
TAGTAAGTATTTCTCCTGGTTATAA
LOC_Os12g41430
OsAffx.32134.1.S1_s_at--141--7071Chr12:25631531..25631555 (25 bp)
GTAAGTATTTCTCCTGGTTATAATT
LOC_Os12g41430
OsAffx.32134.1.S1_s_at--828--1191Chr12:25631528..25631552 (25 bp)
AGTATTTCTCCTGGTTATAATTCTG
LOC_Os12g41430
OsAffx.32134.1.S1_s_at--710--10191Chr12:25631526..25631550 (25 bp)
TATTTCTCCTGGTTATAATTCTGTC
LOC_Os12g41430
OsAffx.32134.1.S1_s_at--530--6791Chr12:25631515..25631539 (25 bp)
GTTATAATTCTGTCATATGCAGGAC
LOC_Os12g41430
OsAffx.32134.1.S1_s_at--996--9731Chr12:25631511..25631535 (25 bp)
TAATTCTGTCATATGCAGGACAAAT
LOC_Os12g41430
OsAffx.32134.1.S1_s_at--529--8731Chr12:25631505..25631529 (25 bp)
TGTCATATGCAGGACAAATGTGCCA
LOC_Os12g41430
OsAffx.32134.1.S1_s_at--362--8691Chr12:25631487..25631511 (25 bp)
TGTGCCAAAAACCAACTGAACCGTG
LOC_Os12g41430
OsAffx.32134.1.S1_s_at--386--9191Chr12:25631485..25631509 (25 bp)
TGCCAAAAACCAACTGAACCGTGAA
LOC_Os12g41430
Target Sequence 
CTTGCCATAGTAAGTATTTCTCCTGGTTATAATTCTGTCATATGCAGGACAAATGTGCCAAAAACCAACTGAACCGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32134.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis